Hb_002182_030

Information

Type -
Description -
Location Contig2182: 19589-19846
Sequence    

Annotation

kegg
ID csv:101231567
description uncharacterized LOC101231567
nr
ID KGN49839.1
description hypothetical protein Csa_5G139175 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0KLU3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139175 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22492: 19481-20148
cDNA
(Sanger)
(ID:Location)		 011_P11.ab1: 19481-20148 , 012_P15.ab1: 19481-20013 , 034_O02.ab1: 19481-20148 , 038_B19.ab1: 19481-20015 , 044_I06.ab1: 19481-20148

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_030 0.0 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
2 Hb_006472_050 0.0850631728 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
3 Hb_001135_210 0.0900329948 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
4 Hb_000975_300 0.0927618128 - - Rab2 [Hevea brasiliensis]
5 Hb_007594_120 0.0941199862 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
6 Hb_002876_120 0.0947733644 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
7 Hb_003581_260 0.1002863245 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
8 Hb_003581_220 0.1035428844 - - unnamed protein product [Vitis vinifera]
9 Hb_001157_010 0.1044800475 - - deoxyhypusine synthase, putative [Ricinus communis]
10 Hb_000069_550 0.1049220737 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
11 Hb_006569_100 0.1060613742 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
12 Hb_032803_010 0.1079812974 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
13 Hb_000061_300 0.1080746634 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
14 Hb_000530_070 0.1091286264 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
15 Hb_020419_020 0.109972962 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_000963_180 0.1127670097 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
17 Hb_000023_340 0.1128992445 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
18 Hb_092107_010 0.1130552637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003929_120 0.1133294032 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
20 Hb_003579_030 0.1138093465 - - phosphatase 2C family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002182_030 Hb_002182_030 Hb_006472_050 Hb_006472_050 Hb_002182_030--Hb_006472_050 Hb_001135_210 Hb_001135_210 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060 Hb_001232_140 Hb_001232_140 Hb_001135_210--Hb_001232_140 Hb_000099_130 Hb_000099_130 Hb_001135_210--Hb_000099_130 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_000062_340 Hb_000062_340 Hb_000975_300--Hb_000062_340 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000975_300--Hb_000963_180 Hb_000975_300--Hb_002876_120 Hb_007594_120--Hb_002876_120 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_007594_120--Hb_000062_340 Hb_007594_120--Hb_020301_040 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_002876_120--Hb_003579_030 Hb_002876_120--Hb_020301_040 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_003581_260--Hb_001135_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.419 42.9111 67.6678 145.676 95.5914 181.398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
315.163 551.428 597.488 75.8505 113.646

CAGE analysis