Hb_002182_040

Information

Type -
Description -
Location Contig2182: 33350-38863
Sequence    

Annotation

kegg
ID rcu:RCOM_0194300
description WD-repeat protein, putative
nr
ID XP_002534336.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9XSC3
description WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1
trembl
ID B9T7W7
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0194300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22494: 35268-37075 , PASA_asmbl_22495: 37108-38740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_040 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_007547_010 0.0800798283 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
3 Hb_003609_040 0.08356926 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
4 Hb_000030_010 0.0957633366 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
5 Hb_000761_020 0.098199412 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
6 Hb_014720_160 0.0988608332 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
7 Hb_005662_030 0.1005004526 - - protein with unknown function [Ricinus communis]
8 Hb_001454_210 0.1009462509 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
9 Hb_009048_040 0.101201323 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
10 Hb_003297_030 0.1023299019 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
11 Hb_000001_020 0.1062331553 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000317_020 0.1091288906 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_000661_050 0.1093851058 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_002876_110 0.1103234676 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002686_290 0.1104086912 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
16 Hb_008453_150 0.1104998503 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
17 Hb_171900_080 0.1117672317 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_002477_160 0.1118589476 - - hypothetical protein L484_013453 [Morus notabilis]
19 Hb_002506_020 0.1118659949 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
20 Hb_000000_080 0.1129532191 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_002182_040 Hb_002182_040 Hb_007547_010 Hb_007547_010 Hb_002182_040--Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_002182_040--Hb_003609_040 Hb_000030_010 Hb_000030_010 Hb_002182_040--Hb_000030_010 Hb_000761_020 Hb_000761_020 Hb_002182_040--Hb_000761_020 Hb_014720_160 Hb_014720_160 Hb_002182_040--Hb_014720_160 Hb_005662_030 Hb_005662_030 Hb_002182_040--Hb_005662_030 Hb_007547_010--Hb_003609_040 Hb_007547_010--Hb_000030_010 Hb_007547_010--Hb_014720_160 Hb_000001_020 Hb_000001_020 Hb_007547_010--Hb_000001_020 Hb_003297_030 Hb_003297_030 Hb_007547_010--Hb_003297_030 Hb_003609_040--Hb_000001_020 Hb_000943_070 Hb_000943_070 Hb_003609_040--Hb_000943_070 Hb_003609_040--Hb_000030_010 Hb_000172_370 Hb_000172_370 Hb_003609_040--Hb_000172_370 Hb_003609_040--Hb_003297_030 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_000922_330 Hb_000922_330 Hb_014720_160--Hb_000922_330 Hb_000085_060 Hb_000085_060 Hb_014720_160--Hb_000085_060 Hb_014720_160--Hb_003609_040 Hb_014720_160--Hb_000001_020 Hb_014720_160--Hb_005662_030 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4918 4.07516 3.10018 7.13603 17.565 15.3382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3797 12.8437 18.0157 4.27689 7.77043

CAGE analysis