Hb_002182_050

Information

Type -
Description -
Location Contig2182: 55590-56057
Sequence    

Annotation

kegg
ID cic:CICLE_v10022654mg
description hypothetical protein
nr
ID XP_006439228.1
description hypothetical protein CICLE_v10022654mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SX21
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022654mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description hypothetical protein CICLE_v10022654mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_050 0.0 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
2 Hb_000487_240 0.0966474081 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
3 Hb_159015_010 0.102299542 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_018133_110 0.1127615209 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_000032_560 0.1211671039 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
6 Hb_005064_040 0.1249836773 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
7 Hb_116478_010 0.1274770515 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
8 Hb_000580_070 0.1281589249 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_000081_020 0.1303695202 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
10 Hb_188923_010 0.1311647842 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_000276_030 0.1348101667 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_001105_200 0.1365282853 - - catalytic, putative [Ricinus communis]
13 Hb_050203_010 0.1372084887 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_000497_120 0.1389529749 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012807_140 0.1391033292 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
16 Hb_000984_080 0.1406518984 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
17 Hb_001104_210 0.1411934462 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
18 Hb_001377_010 0.142618013 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
19 Hb_003090_180 0.1426697588 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
20 Hb_000911_050 0.1442139642 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]

Gene co-expression network

sample Hb_002182_050 Hb_002182_050 Hb_000487_240 Hb_000487_240 Hb_002182_050--Hb_000487_240 Hb_159015_010 Hb_159015_010 Hb_002182_050--Hb_159015_010 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_002182_050--Hb_000032_560 Hb_005064_040 Hb_005064_040 Hb_002182_050--Hb_005064_040 Hb_116478_010 Hb_116478_010 Hb_002182_050--Hb_116478_010 Hb_000276_030 Hb_000276_030 Hb_000487_240--Hb_000276_030 Hb_003090_180 Hb_003090_180 Hb_000487_240--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_000487_240--Hb_001104_210 Hb_000025_740 Hb_000025_740 Hb_000487_240--Hb_000025_740 Hb_012807_140 Hb_012807_140 Hb_000487_240--Hb_012807_140 Hb_000497_120 Hb_000497_120 Hb_159015_010--Hb_000497_120 Hb_159015_010--Hb_005064_040 Hb_159015_010--Hb_116478_010 Hb_159015_010--Hb_000487_240 Hb_000911_050 Hb_000911_050 Hb_159015_010--Hb_000911_050 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000032_560--Hb_000276_030 Hb_000081_020 Hb_000081_020 Hb_005064_040--Hb_000081_020 Hb_005064_040--Hb_000497_120 Hb_031340_030 Hb_031340_030 Hb_005064_040--Hb_031340_030 Hb_000539_080 Hb_000539_080 Hb_005064_040--Hb_000539_080 Hb_000140_260 Hb_000140_260 Hb_005064_040--Hb_000140_260 Hb_116478_010--Hb_005064_040 Hb_116478_010--Hb_000497_120 Hb_116478_010--Hb_000032_560 Hb_006120_010 Hb_006120_010 Hb_116478_010--Hb_006120_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.273585 6.89852 1.48349 11.8459 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149954 0 0.590064 41.0693 2.81817

CAGE analysis