Hb_002182_060

Information

Type transcription factor
Description TF Family: PHD
Location Contig2182: 56697-59431
Sequence    

Annotation

kegg
ID rcu:RCOM_0939950
description Histone-lysine N-methyltransferase ATXR6, putative (EC:2.1.1.43)
nr
ID XP_012080781.1
description PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
swissprot
ID Q9FNE9
description Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana GN=ATXR6 PE=1 SV=1
trembl
ID A0A067K3D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15505 PE=4 SV=1
Gene Ontology
ID GO:0008270
description histone-lysine n-methyltransferase atxr6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22498: 57806-59165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_060 0.0 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
2 Hb_008173_090 0.0629463668 - - glutathione peroxidase, putative [Ricinus communis]
3 Hb_000099_060 0.0682803795 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
4 Hb_000970_010 0.0751491153 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
5 Hb_000200_100 0.0761695776 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
6 Hb_003106_050 0.0816532648 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
7 Hb_002301_140 0.0818990861 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
8 Hb_029866_060 0.0859544052 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
9 Hb_001269_270 0.0865288731 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_003656_070 0.0869930571 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
11 Hb_000264_090 0.0880219744 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
12 Hb_007101_150 0.0912831712 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
13 Hb_155764_020 0.0922484714 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
14 Hb_001235_190 0.0929161771 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_007741_050 0.0939366215 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_000363_480 0.0945515793 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
17 Hb_003125_150 0.0948746892 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
18 Hb_007672_010 0.0961450334 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
19 Hb_000574_480 0.096451835 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_007479_020 0.0967462215 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002182_060 Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_002182_060--Hb_008173_090 Hb_000099_060 Hb_000099_060 Hb_002182_060--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_003106_050 Hb_003106_050 Hb_002182_060--Hb_003106_050 Hb_002301_140 Hb_002301_140 Hb_002182_060--Hb_002301_140 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_008173_090--Hb_000970_010 Hb_000134_330 Hb_000134_330 Hb_000099_060--Hb_000134_330 Hb_000099_060--Hb_008173_090 Hb_155764_020 Hb_155764_020 Hb_000099_060--Hb_155764_020 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_000200_100--Hb_002301_140 Hb_000200_100--Hb_001235_190 Hb_001257_080 Hb_001257_080 Hb_000200_100--Hb_001257_080 Hb_000200_100--Hb_000970_010 Hb_003106_050--Hb_008173_090 Hb_014720_080 Hb_014720_080 Hb_003106_050--Hb_014720_080 Hb_029866_060 Hb_029866_060 Hb_003106_050--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003106_050--Hb_000111_330 Hb_000503_050 Hb_000503_050 Hb_003106_050--Hb_000503_050 Hb_028995_040 Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_023226_040 Hb_023226_040 Hb_002301_140--Hb_023226_040 Hb_002007_060 Hb_002007_060 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_002301_140--Hb_001235_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09749 1.03128 0.521236 0.930762 1.19679 1.43821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63366 4.28947 2.23379 0.863852 0.24253

CAGE analysis