Hb_002182_080

Information

Type -
Description -
Location Contig2182: 76959-87317
Sequence    

Annotation

kegg
ID rcu:RCOM_1377360
description 3-5 exonuclease, putative
nr
ID XP_002515649.1
description 3-5 exonuclease, putative [Ricinus communis]
swissprot
ID Q8N9H8
description Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3
trembl
ID B9RPI0
description 3-5 exonuclease, putative OS=Ricinus communis GN=RCOM_1377360 PE=4 SV=1
Gene Ontology
ID GO:0003676
description exonuclease mut-7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22499: 77014-87228 , PASA_asmbl_22500: 77227-78327 , PASA_asmbl_22501: 77227-80899
cDNA
(Sanger)
(ID:Location)		 002_M19.ab1: 77014-80874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_080 0.0 - - 3-5 exonuclease, putative [Ricinus communis]
2 Hb_001279_150 0.0602136215 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
3 Hb_002835_080 0.0604868252 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
4 Hb_000215_110 0.0609603221 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
5 Hb_019280_040 0.061112581 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_008092_040 0.0632886919 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
7 Hb_003108_020 0.0653278887 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
8 Hb_000227_080 0.0676106076 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_670 0.0715616036 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_000092_170 0.0722147299 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_005489_060 0.0733193961 - - Anamorsin, putative [Ricinus communis]
12 Hb_001638_170 0.07441465 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
13 Hb_003605_090 0.0751773106 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
14 Hb_058999_020 0.0758985505 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
15 Hb_003750_050 0.0774295043 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
16 Hb_000120_470 0.0783835193 - - hypothetical protein VITISV_017372 [Vitis vinifera]
17 Hb_002473_130 0.078680296 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
18 Hb_001252_130 0.0790816042 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
19 Hb_000580_180 0.0799921376 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007416_280 0.0819638187 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002182_080 Hb_002182_080 Hb_001279_150 Hb_001279_150 Hb_002182_080--Hb_001279_150 Hb_002835_080 Hb_002835_080 Hb_002182_080--Hb_002835_080 Hb_000215_110 Hb_000215_110 Hb_002182_080--Hb_000215_110 Hb_019280_040 Hb_019280_040 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002835_080--Hb_019280_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_008092_040--Hb_000215_110 Hb_143398_010 Hb_143398_010 Hb_008092_040--Hb_143398_010 Hb_005357_080 Hb_005357_080 Hb_008092_040--Hb_005357_080 Hb_007416_280 Hb_007416_280 Hb_008092_040--Hb_007416_280 Hb_008092_040--Hb_002835_080 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89341 4.76607 4.89289 8.52435 5.91147 11.8199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42009 12.3168 9.62841 7.42153 5.12608

CAGE analysis