Hb_002183_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig2183: 49040-53123
Sequence    

Annotation

kegg
ID rcu:RCOM_0098170
description hypothetical protein
nr
ID XP_002533457.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7F8R0
description Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1
trembl
ID B9T5D8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0098170 PE=4 SV=1
Gene Ontology
ID GO:0003723
description zinc finger ccch domain-containing protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22503: 49032-53093 , PASA_asmbl_22504: 50925-53104 , PASA_asmbl_22505: 50174-50287 , PASA_asmbl_22506: 50383-50588
cDNA
(Sanger)
(ID:Location)		 001_D11.ab1: 49668-53093 , 027_E05.ab1: 49707-53095 , 029_M19.ab1: 51041-53104 , 034_I02.ab1: 49694-53093 , 052_E09.ab1: 49694-53095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002183_060 0.0 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
2 Hb_000421_220 0.0578402954 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
3 Hb_001386_040 0.0662156499 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
4 Hb_008453_030 0.0698543733 - - Thioredoxin superfamily protein [Theobroma cacao]
5 Hb_015934_070 0.0711188758 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
6 Hb_031862_100 0.0747891814 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003697_040 0.0753308893 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_001545_170 0.0759706149 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
9 Hb_011360_070 0.0774361883 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
10 Hb_004324_270 0.0775118791 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
11 Hb_002111_040 0.08057114 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
12 Hb_012490_070 0.0809578783 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000061_210 0.0821420896 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
14 Hb_000107_160 0.0823467003 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
15 Hb_025240_040 0.0826139177 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
16 Hb_004934_100 0.0830246201 - - conserved hypothetical protein [Ricinus communis]
17 Hb_017225_020 0.0834648025 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
18 Hb_000120_460 0.0840766326 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
19 Hb_000059_370 0.0848680847 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
20 Hb_001006_020 0.0848768498 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002183_060 Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_002183_060--Hb_000421_220 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_008453_030 Hb_008453_030 Hb_002183_060--Hb_008453_030 Hb_015934_070 Hb_015934_070 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_000421_220--Hb_015934_070 Hb_001386_040--Hb_031862_100 Hb_000948_160 Hb_000948_160 Hb_001386_040--Hb_000948_160 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_008453_030--Hb_004934_100 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9626 12.6693 18.8665 28.4949 25.0777 32.6852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0806 63.5149 37.7164 35.3672 35.1181

CAGE analysis