Hb_002183_090

Information

Type -
Description -
Location Contig2183: 100357-110876
Sequence    

Annotation

kegg
ID tcc:TCM_024891
description Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1
nr
ID XP_012087754.1
description PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JYK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22510: 100644-101199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002183_090 0.0 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
2 Hb_000085_050 0.0566703355 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000976_170 0.0605262053 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
4 Hb_000384_100 0.0650518507 - - hydrolase, putative [Ricinus communis]
5 Hb_033834_040 0.0659576763 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002044_080 0.068071737 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
7 Hb_000251_130 0.0702842094 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
8 Hb_009838_080 0.0711028684 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_004254_120 0.0731723234 - - conserved hypothetical protein [Ricinus communis]
10 Hb_108350_010 0.0737288284 - - GTP-binding protein erg, putative [Ricinus communis]
11 Hb_002226_070 0.0745513276 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_008221_140 0.0748916194 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
13 Hb_006031_020 0.0755596817 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
14 Hb_006400_030 0.0774852469 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
15 Hb_058999_020 0.0780010189 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
16 Hb_005463_040 0.0787342081 - - signal transducer, putative [Ricinus communis]
17 Hb_005618_170 0.0792400903 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
18 Hb_001226_160 0.0799847575 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
19 Hb_002214_040 0.0802720283 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_025240_040 0.0806086463 - - hypothetical protein JCGZ_02438 [Jatropha curcas]

Gene co-expression network

sample Hb_002183_090 Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_000120_460 Hb_000120_460 Hb_000976_170--Hb_000120_460 Hb_000976_170--Hb_108350_010 Hb_025240_040 Hb_025240_040 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_000479_090 Hb_000479_090 Hb_000384_100--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000920_110 Hb_000920_110 Hb_000384_100--Hb_000920_110 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_002044_080--Hb_000085_050 Hb_001226_160 Hb_001226_160 Hb_000251_130--Hb_001226_160 Hb_000656_400 Hb_000656_400 Hb_000251_130--Hb_000656_400 Hb_005357_030 Hb_005357_030 Hb_000251_130--Hb_005357_030 Hb_172632_090 Hb_172632_090 Hb_000251_130--Hb_172632_090 Hb_019253_020 Hb_019253_020 Hb_000251_130--Hb_019253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00867 3.82739 3.68578 3.75611 7.37649 10.211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64716 15.3436 11.3876 7.39821 5.28974

CAGE analysis