Hb_002184_090

Information

Type -
Description -
Location Contig2184: 144789-154241
Sequence    

Annotation

kegg
ID rcu:RCOM_1590210
description DNA binding protein, putative
nr
ID XP_002510204.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID A0A067KQD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22516: 144795-153664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002184_090 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001195_060 0.0822084462 - - Protein yrdA, putative [Ricinus communis]
3 Hb_000127_140 0.0827513943 - - transporter-related family protein [Populus trichocarpa]
4 Hb_000329_210 0.0875837924 - - Golgi snare 12 isoform 1 [Theobroma cacao]
5 Hb_004257_010 0.0886034985 - - CMP-sialic acid transporter, putative [Ricinus communis]
6 Hb_008147_090 0.0926710887 - - conserved hypothetical protein [Ricinus communis]
7 Hb_180343_010 0.0942913795 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
8 Hb_000244_170 0.0998072584 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
9 Hb_005167_010 0.1014877156 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_000721_030 0.1050520919 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
11 Hb_005765_050 0.1076676886 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
12 Hb_013394_050 0.1086675666 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
13 Hb_000062_330 0.1094388666 - - unknown [Lotus japonicus]
14 Hb_004965_110 0.1122827788 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
15 Hb_000181_350 0.1127854882 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
16 Hb_002392_010 0.1132186647 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
17 Hb_003305_040 0.1145402259 - - AP47/50p mRNA family protein [Populus trichocarpa]
18 Hb_001662_130 0.1146773853 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
19 Hb_001951_130 0.115265646 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_004223_050 0.1155325495 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_002184_090 Hb_002184_090 Hb_001195_060 Hb_001195_060 Hb_002184_090--Hb_001195_060 Hb_000127_140 Hb_000127_140 Hb_002184_090--Hb_000127_140 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_008147_090 Hb_008147_090 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_001195_060--Hb_000127_140 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_000329_210--Hb_004257_010 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200 Hb_002392_010 Hb_002392_010 Hb_004257_010--Hb_002392_010 Hb_004257_010--Hb_001195_060 Hb_004257_010--Hb_005167_010 Hb_001892_070 Hb_001892_070 Hb_004257_010--Hb_001892_070 Hb_008147_090--Hb_180343_010 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_008147_090--Hb_002392_010 Hb_008147_090--Hb_001195_060 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41008 2.16661 10.6102 13.3602 3.13683 5.66477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.95295 8.24076 11.1654 4.33203 8.60605

CAGE analysis