Hb_002184_150

Information

Type -
Description -
Location Contig2184: 228945-231993
Sequence    

Annotation

kegg
ID rcu:RCOM_1590270
description DCL protein, chloroplast precursor, putative
nr
ID XP_002510210.1
description DCL protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q42463
description Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1
trembl
ID B9R7B7
description DCL protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1590270 PE=4 SV=1
Gene Ontology
ID GO:0005507
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22522: 228915-231969 , PASA_asmbl_22523: 229222-231634 , PASA_asmbl_22524: 229497-229908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002184_150 0.0 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_000700_150 0.0884138164 - - conserved hypothetical protein [Ricinus communis]
3 Hb_069662_010 0.0899323298 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
4 Hb_163950_030 0.0905232489 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
5 Hb_001205_300 0.1057870616 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
6 Hb_003440_060 0.109090282 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
7 Hb_008642_040 0.1137324912 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
8 Hb_001348_180 0.1156819097 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
9 Hb_004531_140 0.1165102316 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
10 Hb_021346_030 0.116714977 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
11 Hb_000920_030 0.1197186392 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_002079_030 0.1208005752 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
13 Hb_004440_020 0.1214036376 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
14 Hb_004619_080 0.1216130574 - - hypothetical protein PRUPE_ppa011369mg [Prunus persica]
15 Hb_002163_040 0.1221084829 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000959_030 0.1230735479 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_000948_170 0.1238027347 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
18 Hb_004060_020 0.125361817 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000333_080 0.1255967734 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
20 Hb_004032_410 0.1259908905 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002184_150 Hb_002184_150 Hb_000700_150 Hb_000700_150 Hb_002184_150--Hb_000700_150 Hb_069662_010 Hb_069662_010 Hb_002184_150--Hb_069662_010 Hb_163950_030 Hb_163950_030 Hb_002184_150--Hb_163950_030 Hb_001205_300 Hb_001205_300 Hb_002184_150--Hb_001205_300 Hb_003440_060 Hb_003440_060 Hb_002184_150--Hb_003440_060 Hb_008642_040 Hb_008642_040 Hb_002184_150--Hb_008642_040 Hb_002769_020 Hb_002769_020 Hb_000700_150--Hb_002769_020 Hb_000700_150--Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_000700_150--Hb_003462_070 Hb_004032_410 Hb_004032_410 Hb_000700_150--Hb_004032_410 Hb_000061_020 Hb_000061_020 Hb_000700_150--Hb_000061_020 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_004837_030 Hb_004837_030 Hb_163950_030--Hb_004837_030 Hb_009694_010 Hb_009694_010 Hb_163950_030--Hb_009694_010 Hb_004841_010 Hb_004841_010 Hb_163950_030--Hb_004841_010 Hb_000494_040 Hb_000494_040 Hb_163950_030--Hb_000494_040 Hb_000606_090 Hb_000606_090 Hb_163950_030--Hb_000606_090 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_009225_020 Hb_009225_020 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_012395_230 Hb_012395_230 Hb_008642_040--Hb_012395_230 Hb_000331_110 Hb_000331_110 Hb_008642_040--Hb_000331_110 Hb_001186_090 Hb_001186_090 Hb_008642_040--Hb_001186_090 Hb_000804_040 Hb_000804_040 Hb_008642_040--Hb_000804_040 Hb_004109_280 Hb_004109_280 Hb_008642_040--Hb_004109_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3647 5.67572 27.4975 20.3826 20.7152 32.4097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6997 20.4724 10.4321 6.40753 28.639

CAGE analysis