Hb_002185_010

Information

Type -
Description -
Location Contig2185: 141-2287
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012480792.1
description PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002185_010 0.0 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
2 Hb_000457_040 0.2447606233 - - -
3 Hb_054144_010 0.2982349755 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_161994_020 0.3268170471 - - -
5 Hb_003096_020 0.3514805336 - - -
6 Hb_001935_210 0.3621272444 - - -
7 Hb_107500_010 0.3665138955 - - -
8 Hb_134310_030 0.3669621234 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
9 Hb_004088_060 0.3733934793 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
10 Hb_000853_380 0.3811956241 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005524_010 0.3825901716 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_000275_040 0.3864848724 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_053281_010 0.3903487793 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
14 Hb_000189_210 0.3922357615 - - hypothetical protein CICLE_v10005534mg [Citrus clementina]
15 Hb_040991_010 0.4027605046 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_158253_010 0.4028681497 - - -
17 Hb_000025_550 0.403336016 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002542_120 0.4035659334 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_020730_010 0.4038345702 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
20 Hb_020248_010 0.4062026952 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002185_010 Hb_002185_010 Hb_000457_040 Hb_000457_040 Hb_002185_010--Hb_000457_040 Hb_054144_010 Hb_054144_010 Hb_002185_010--Hb_054144_010 Hb_161994_020 Hb_161994_020 Hb_002185_010--Hb_161994_020 Hb_003096_020 Hb_003096_020 Hb_002185_010--Hb_003096_020 Hb_001935_210 Hb_001935_210 Hb_002185_010--Hb_001935_210 Hb_107500_010 Hb_107500_010 Hb_002185_010--Hb_107500_010 Hb_000853_380 Hb_000853_380 Hb_000457_040--Hb_000853_380 Hb_000457_040--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_000457_040--Hb_001268_100 Hb_000326_020 Hb_000326_020 Hb_000457_040--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000457_040--Hb_032533_010 Hb_054144_010--Hb_003096_020 Hb_000826_060 Hb_000826_060 Hb_054144_010--Hb_000826_060 Hb_002631_220 Hb_002631_220 Hb_054144_010--Hb_002631_220 Hb_005928_050 Hb_005928_050 Hb_054144_010--Hb_005928_050 Hb_005273_020 Hb_005273_020 Hb_054144_010--Hb_005273_020 Hb_004939_020 Hb_004939_020 Hb_161994_020--Hb_004939_020 Hb_001269_560 Hb_001269_560 Hb_161994_020--Hb_001269_560 Hb_002417_060 Hb_002417_060 Hb_161994_020--Hb_002417_060 Hb_134310_030 Hb_134310_030 Hb_161994_020--Hb_134310_030 Hb_003337_070 Hb_003337_070 Hb_161994_020--Hb_003337_070 Hb_063716_070 Hb_063716_070 Hb_161994_020--Hb_063716_070 Hb_003096_020--Hb_002631_220 Hb_161023_010 Hb_161023_010 Hb_003096_020--Hb_161023_010 Hb_188411_010 Hb_188411_010 Hb_003096_020--Hb_188411_010 Hb_007592_020 Hb_007592_020 Hb_003096_020--Hb_007592_020 Hb_160233_020 Hb_160233_020 Hb_003096_020--Hb_160233_020 Hb_040991_010 Hb_040991_010 Hb_001935_210--Hb_040991_010 Hb_000832_330 Hb_000832_330 Hb_001935_210--Hb_000832_330 Hb_001414_130 Hb_001414_130 Hb_001935_210--Hb_001414_130 Hb_059924_010 Hb_059924_010 Hb_001935_210--Hb_059924_010 Hb_001811_010 Hb_001811_010 Hb_001935_210--Hb_001811_010 Hb_004330_030 Hb_004330_030 Hb_001935_210--Hb_004330_030 Hb_107500_010--Hb_001268_100 Hb_107500_010--Hb_000853_380 Hb_004724_350 Hb_004724_350 Hb_107500_010--Hb_004724_350 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104568 0.156536 0 0.0518414 0.182338 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.1683 0 0 0

CAGE analysis