Hb_002186_110

Information

Type -
Description -
Location Contig2186: 122035-126442
Sequence    

Annotation

kegg
ID cic:CICLE_v10024045mg
description hypothetical protein
nr
ID XP_006442731.1
description hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U1D5
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024045mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22531: 122527-123029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_110 0.0 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
2 Hb_011381_050 0.0748544152 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
3 Hb_000197_260 0.0807343222 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
4 Hb_115572_010 0.0921926561 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
5 Hb_152914_010 0.0941135526 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
6 Hb_000172_450 0.0991266707 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
7 Hb_180980_010 0.0997911925 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
8 Hb_003582_030 0.1008289477 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
9 Hb_000030_230 0.103070666 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_003023_030 0.1034218007 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
11 Hb_103225_030 0.1043526747 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
12 Hb_001541_170 0.1054163001 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
13 Hb_001936_120 0.1081138842 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
14 Hb_002534_070 0.1086939748 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_000000_260 0.1097873299 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
16 Hb_002186_170 0.1098104615 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
17 Hb_000599_160 0.1098687187 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
18 Hb_007101_070 0.110496535 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
19 Hb_007919_010 0.1106471948 - - conserved hypothetical protein [Ricinus communis]
20 Hb_036520_030 0.1113490591 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]

Gene co-expression network

sample Hb_002186_110 Hb_002186_110 Hb_011381_050 Hb_011381_050 Hb_002186_110--Hb_011381_050 Hb_000197_260 Hb_000197_260 Hb_002186_110--Hb_000197_260 Hb_115572_010 Hb_115572_010 Hb_002186_110--Hb_115572_010 Hb_152914_010 Hb_152914_010 Hb_002186_110--Hb_152914_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_180980_010 Hb_180980_010 Hb_002186_110--Hb_180980_010 Hb_011381_050--Hb_115572_010 Hb_009117_020 Hb_009117_020 Hb_011381_050--Hb_009117_020 Hb_001401_120 Hb_001401_120 Hb_011381_050--Hb_001401_120 Hb_036520_030 Hb_036520_030 Hb_011381_050--Hb_036520_030 Hb_011381_050--Hb_000197_260 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_115572_010--Hb_009117_020 Hb_000083_200 Hb_000083_200 Hb_115572_010--Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_115572_010--Hb_001349_040 Hb_115572_010--Hb_001401_120 Hb_000137_050 Hb_000137_050 Hb_152914_010--Hb_000137_050 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_152914_010--Hb_180980_010 Hb_001500_020 Hb_001500_020 Hb_000172_450--Hb_001500_020 Hb_002260_140 Hb_002260_140 Hb_000172_450--Hb_002260_140 Hb_006351_050 Hb_006351_050 Hb_000172_450--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_000172_450--Hb_180088_010 Hb_135757_030 Hb_135757_030 Hb_000172_450--Hb_135757_030 Hb_112950_010 Hb_112950_010 Hb_000172_450--Hb_112950_010 Hb_133492_010 Hb_133492_010 Hb_180980_010--Hb_133492_010 Hb_029791_010 Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_180980_010--Hb_000317_170 Hb_180980_010--Hb_000137_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.55407 0.415315 2.84332 0.0320096 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0343855 0.77471

CAGE analysis