Hb_002186_170

Information

Type -
Description -
Location Contig2186: 200484-202721
Sequence    

Annotation

kegg
ID pop:POPTR_0067s00200g
description hypothetical protein
nr
ID XP_006388952.1
description hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
swissprot
ID Q04912
description Macrophage-stimulating protein receptor OS=Homo sapiens GN=MST1R PE=1 SV=2
trembl
ID U7E2M7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0067s00200g PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22533: 200631-201697 , PASA_asmbl_22534: 128261-227019 , PASA_asmbl_22536: 200511-200626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_170 0.0 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
2 Hb_000175_370 0.0839850576 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
3 Hb_000098_230 0.0884503488 - - Potassium channel AKT2/3, putative [Ricinus communis]
4 Hb_000422_060 0.0887941665 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
5 Hb_001541_170 0.0934660061 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
6 Hb_003582_030 0.0945094406 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
7 Hb_000646_040 0.096308569 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
8 Hb_000120_560 0.098039687 - - protein with unknown function [Ricinus communis]
9 Hb_000201_050 0.099514751 - - -
10 Hb_002053_020 0.1002259441 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
11 Hb_027746_030 0.1019304492 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012217_010 0.1056537272 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
13 Hb_032299_020 0.1069552388 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_003023_030 0.1090543014 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
15 Hb_080601_010 0.1095062056 - - metallothionein 3-like protein [Hevea brasiliensis]
16 Hb_002186_110 0.1098104615 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
17 Hb_007919_010 0.1108535954 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000030_230 0.113948151 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
19 Hb_007545_220 0.1145893359 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
20 Hb_032260_040 0.1148012074 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002186_170 Hb_002186_170 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_000120_560 Hb_000120_560 Hb_000175_370--Hb_000120_560 Hb_000139_390 Hb_000139_390 Hb_000175_370--Hb_000139_390 Hb_001500_020 Hb_001500_020 Hb_000175_370--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_000175_370--Hb_006351_050 Hb_000172_450 Hb_000172_450 Hb_000175_370--Hb_000172_450 Hb_000098_230--Hb_001541_170 Hb_000098_230--Hb_003582_030 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_000422_060--Hb_007919_010 Hb_000349_280 Hb_000349_280 Hb_000422_060--Hb_000349_280 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_003582_030--Hb_000646_040 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260 Hb_000646_040--Hb_000120_560 Hb_002534_070 Hb_002534_070 Hb_000646_040--Hb_002534_070 Hb_000646_040--Hb_007919_010 Hb_000646_040--Hb_000422_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.69097 1.69178 15.3571 0.124748 0.0312532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.037332 0 0 0.0822477 2.25718

CAGE analysis