Hb_002186_190

Information

Type -
Description -
Location Contig2186: 224624-227017
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22534: 128261-227019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002186_190 0.0 - - -
2 Hb_000429_070 0.0648213521 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
3 Hb_001401_130 0.0682376647 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
4 Hb_000637_090 0.0721585749 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
5 Hb_000012_340 0.0724950484 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
6 Hb_007677_010 0.073249317 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
7 Hb_009470_010 0.0761520772 - - -
8 Hb_001956_170 0.0762847375 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
9 Hb_001454_030 0.0780239018 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
10 Hb_001386_070 0.0816550322 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
11 Hb_103942_020 0.0843476872 - - unknown [Zea mays]
12 Hb_009896_010 0.0904076647 - - ABC transporter G family member 15 [Morus notabilis]
13 Hb_003925_010 0.0919435396 - - Polygalacturonase precursor, putative [Ricinus communis]
14 Hb_001597_040 0.0928693169 - - -
15 Hb_005539_330 0.0947858723 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
16 Hb_002215_020 0.0966536792 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
17 Hb_001634_070 0.0981164643 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003607_040 0.1023750032 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_053058_010 0.1041686351 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014881_020 0.105853678 - - Protein P21, putative [Ricinus communis]

Gene co-expression network

sample Hb_002186_190 Hb_002186_190 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010 Hb_000429_070--Hb_001401_130 Hb_001386_070 Hb_001386_070 Hb_000429_070--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_000429_070--Hb_012180_070 Hb_000485_050 Hb_000485_050 Hb_000429_070--Hb_000485_050 Hb_003925_010 Hb_003925_010 Hb_000429_070--Hb_003925_010 Hb_001401_130--Hb_001386_070 Hb_001401_130--Hb_012180_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_001401_130--Hb_000012_340 Hb_000637_090--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_000637_090--Hb_001956_170 Hb_009896_010 Hb_009896_010 Hb_000637_090--Hb_009896_010 Hb_000637_090--Hb_003925_010 Hb_000637_090--Hb_009470_010 Hb_000816_170 Hb_000816_170 Hb_000012_340--Hb_000816_170 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_003607_040 Hb_003607_040 Hb_000012_340--Hb_003607_040 Hb_007677_010--Hb_001956_170 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_009896_010 Hb_009470_010--Hb_001956_170 Hb_009470_010--Hb_009896_010 Hb_009470_010--Hb_003925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32117 0.885352 139.679 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.203221 5.50189

CAGE analysis