Hb_002188_050

Information

Type -
Description -
Location Contig2188: 37077-43214
Sequence    

Annotation

kegg
ID vvi:100265066
description serine carboxypeptidase-like 13
nr
ID XP_012093174.1
description PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
swissprot
ID Q9CAU3
description Serine carboxypeptidase-like 2 OS=Arabidopsis thaliana GN=SCPL2 PE=2 SV=1
trembl
ID A0A067L800
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16380 PE=4 SV=1
Gene Ontology
ID GO:0004180
description serine carboxypeptidase-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_050 0.0 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
2 Hb_006415_010 0.0364190313 - - -
3 Hb_000906_120 0.0408378269 - - hypothetical protein VITISV_006406 [Vitis vinifera]
4 Hb_005021_040 0.0415203484 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
5 Hb_089299_010 0.0991247053 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005714_120 0.1191091191 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_002121_070 0.1198896727 - - conserved hypothetical protein [Ricinus communis]
8 Hb_188163_010 0.1264410756 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
9 Hb_000362_100 0.1304016868 - - -
10 Hb_036731_010 0.1365112179 - - -
11 Hb_007632_140 0.1386446771 - - -
12 Hb_002876_100 0.1405044017 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
13 Hb_166210_010 0.1507003505 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004129_180 0.1523167832 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
15 Hb_019135_010 0.1536690783 - - -
16 Hb_010129_020 0.1590881832 - - cytochrome P450, putative [Ricinus communis]
17 Hb_142051_010 0.1728990281 - - -
18 Hb_001699_020 0.1733651168 - - hypothetical protein L484_026849 [Morus notabilis]
19 Hb_011987_010 0.1741646897 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_002233_050 0.1822897606 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]

Gene co-expression network

sample Hb_002188_050 Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_002188_050--Hb_006415_010 Hb_000906_120 Hb_000906_120 Hb_002188_050--Hb_000906_120 Hb_005021_040 Hb_005021_040 Hb_002188_050--Hb_005021_040 Hb_089299_010 Hb_089299_010 Hb_002188_050--Hb_089299_010 Hb_005714_120 Hb_005714_120 Hb_002188_050--Hb_005714_120 Hb_002121_070 Hb_002121_070 Hb_002188_050--Hb_002121_070 Hb_006415_010--Hb_000906_120 Hb_006415_010--Hb_005021_040 Hb_006415_010--Hb_089299_010 Hb_006415_010--Hb_005714_120 Hb_006415_010--Hb_002121_070 Hb_000906_120--Hb_089299_010 Hb_000906_120--Hb_005021_040 Hb_188163_010 Hb_188163_010 Hb_000906_120--Hb_188163_010 Hb_142051_010 Hb_142051_010 Hb_000906_120--Hb_142051_010 Hb_005021_040--Hb_002121_070 Hb_005021_040--Hb_005714_120 Hb_000362_100 Hb_000362_100 Hb_005021_040--Hb_000362_100 Hb_089299_010--Hb_142051_010 Hb_002809_090 Hb_002809_090 Hb_089299_010--Hb_002809_090 Hb_029510_080 Hb_029510_080 Hb_089299_010--Hb_029510_080 Hb_036731_010 Hb_036731_010 Hb_005714_120--Hb_036731_010 Hb_005714_120--Hb_002121_070 Hb_166210_010 Hb_166210_010 Hb_005714_120--Hb_166210_010 Hb_005714_120--Hb_000362_100 Hb_001514_140 Hb_001514_140 Hb_005714_120--Hb_001514_140 Hb_002121_070--Hb_000362_100 Hb_007632_140 Hb_007632_140 Hb_002121_070--Hb_007632_140 Hb_002121_070--Hb_036731_010 Hb_019135_010 Hb_019135_010 Hb_002121_070--Hb_019135_010 Hb_002121_070--Hb_166210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0993572 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.23434 0.486757

CAGE analysis