Hb_002188_090

Information

Type -
Description -
Location Contig2188: 72254-108237
Sequence    

Annotation

kegg
ID rcu:RCOM_1383110
description protein binding protein, putative
nr
ID XP_012093168.1
description PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID B9S7Z7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1383110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22542: 84104-105042 , PASA_asmbl_22543: 84104-105042 , PASA_asmbl_22544: 81304-88699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_090 0.0 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
2 Hb_001196_060 0.0663437037 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
3 Hb_001522_010 0.0876560064 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
4 Hb_005462_020 0.0937991619 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
5 Hb_004970_160 0.0987982101 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
6 Hb_000363_380 0.099440292 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
7 Hb_000504_150 0.1044228157 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
8 Hb_006829_090 0.1044523428 - - PREDICTED: protein MOS2 [Jatropha curcas]
9 Hb_000487_220 0.1072511949 - - eukaryotic translation elongation factor, putative [Ricinus communis]
10 Hb_017895_020 0.1076723756 - - Vacuolar protein sorting protein, putative [Ricinus communis]
11 Hb_031069_020 0.1077665801 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
12 Hb_078477_040 0.1096376374 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_000347_570 0.1120869541 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_002612_010 0.1144506335 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
15 Hb_000250_070 0.1156753304 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
16 Hb_000640_200 0.115925899 - - hypothetical protein RCOM_1346600 [Ricinus communis]
17 Hb_003029_130 0.1170129844 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
18 Hb_002084_040 0.1185459888 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
19 Hb_006588_050 0.1194881446 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
20 Hb_008246_030 0.1195466892 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002188_090 Hb_002188_090 Hb_001196_060 Hb_001196_060 Hb_002188_090--Hb_001196_060 Hb_001522_010 Hb_001522_010 Hb_002188_090--Hb_001522_010 Hb_005462_020 Hb_005462_020 Hb_002188_090--Hb_005462_020 Hb_004970_160 Hb_004970_160 Hb_002188_090--Hb_004970_160 Hb_000363_380 Hb_000363_380 Hb_002188_090--Hb_000363_380 Hb_000504_150 Hb_000504_150 Hb_002188_090--Hb_000504_150 Hb_000250_070 Hb_000250_070 Hb_001196_060--Hb_000250_070 Hb_001196_060--Hb_004970_160 Hb_000487_220 Hb_000487_220 Hb_001196_060--Hb_000487_220 Hb_000475_020 Hb_000475_020 Hb_001196_060--Hb_000475_020 Hb_031069_020 Hb_031069_020 Hb_001196_060--Hb_031069_020 Hb_006829_090 Hb_006829_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_001522_010--Hb_005462_020 Hb_001009_290 Hb_001009_290 Hb_001522_010--Hb_001009_290 Hb_000313_340 Hb_000313_340 Hb_001522_010--Hb_000313_340 Hb_005462_020--Hb_078477_040 Hb_005462_020--Hb_004970_160 Hb_005462_020--Hb_006829_090 Hb_006002_030 Hb_006002_030 Hb_005462_020--Hb_006002_030 Hb_022250_110 Hb_022250_110 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_008246_030 Hb_008246_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000363_380--Hb_000487_220 Hb_000504_150--Hb_000487_220 Hb_000504_150--Hb_004970_160 Hb_000504_150--Hb_003029_130 Hb_000504_150--Hb_001196_060 Hb_001811_120 Hb_001811_120 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.68 19.992 10.738 6.04008 39.901 36.0525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19396 4.27735 4.46035 14.5848 14.4645

CAGE analysis