Hb_002188_120

Information

Type -
Description -
Location Contig2188: 147829-148290
Sequence    

Annotation

kegg
ID pxb:103928058
description thymocyte nuclear protein 1
nr
ID XP_009335344.1
description PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
swissprot
ID Q6P3E0
description Thymocyte nuclear protein 1 OS=Rattus norvegicus GN=Thyn1 PE=2 SV=1
trembl
ID W9QZP9
description Uncharacterized protein OS=Morus notabilis GN=L484_003344 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22553: 147796-148471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_120 0.0 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
2 Hb_000111_420 0.0905089267 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
3 Hb_007922_020 0.120823351 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
4 Hb_001546_060 0.1242109747 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
5 Hb_000631_080 0.1244076721 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
6 Hb_001369_750 0.1251233329 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
7 Hb_009658_020 0.1262557873 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
8 Hb_000261_060 0.1264936831 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
9 Hb_153533_010 0.1267802589 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
10 Hb_007317_140 0.1278522986 - - expressed protein, putative [Ricinus communis]
11 Hb_002276_020 0.1325533444 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
12 Hb_012035_050 0.1355456581 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
13 Hb_000193_270 0.1368541922 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
14 Hb_018292_010 0.1376134318 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
15 Hb_000861_020 0.1381253968 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
16 Hb_005504_060 0.1381375148 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
17 Hb_003663_060 0.139415533 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
18 Hb_105123_010 0.1398017703 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
19 Hb_009558_030 0.140371141 - - myb3r3, putative [Ricinus communis]
20 Hb_005253_030 0.1430262718 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002188_120 Hb_002188_120 Hb_000111_420 Hb_000111_420 Hb_002188_120--Hb_000111_420 Hb_007922_020 Hb_007922_020 Hb_002188_120--Hb_007922_020 Hb_001546_060 Hb_001546_060 Hb_002188_120--Hb_001546_060 Hb_000631_080 Hb_000631_080 Hb_002188_120--Hb_000631_080 Hb_001369_750 Hb_001369_750 Hb_002188_120--Hb_001369_750 Hb_009658_020 Hb_009658_020 Hb_002188_120--Hb_009658_020 Hb_012035_050 Hb_012035_050 Hb_000111_420--Hb_012035_050 Hb_166222_010 Hb_166222_010 Hb_000111_420--Hb_166222_010 Hb_105123_010 Hb_105123_010 Hb_000111_420--Hb_105123_010 Hb_155159_030 Hb_155159_030 Hb_000111_420--Hb_155159_030 Hb_012098_080 Hb_012098_080 Hb_000111_420--Hb_012098_080 Hb_000261_060 Hb_000261_060 Hb_007922_020--Hb_000261_060 Hb_036790_080 Hb_036790_080 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007317_140 Hb_007317_140 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_001049_110 Hb_001049_110 Hb_001546_060--Hb_001049_110 Hb_103118_010 Hb_103118_010 Hb_001546_060--Hb_103118_010 Hb_001546_060--Hb_007317_140 Hb_000061_210 Hb_000061_210 Hb_001546_060--Hb_000061_210 Hb_000415_040 Hb_000415_040 Hb_001546_060--Hb_000415_040 Hb_005253_030 Hb_005253_030 Hb_001546_060--Hb_005253_030 Hb_000574_390 Hb_000574_390 Hb_000631_080--Hb_000574_390 Hb_086639_040 Hb_086639_040 Hb_000631_080--Hb_086639_040 Hb_002685_210 Hb_002685_210 Hb_000631_080--Hb_002685_210 Hb_000861_020 Hb_000861_020 Hb_000631_080--Hb_000861_020 Hb_015941_020 Hb_015941_020 Hb_000631_080--Hb_015941_020 Hb_004225_050 Hb_004225_050 Hb_000631_080--Hb_004225_050 Hb_000479_250 Hb_000479_250 Hb_001369_750--Hb_000479_250 Hb_001369_750--Hb_000261_060 Hb_002276_020 Hb_002276_020 Hb_001369_750--Hb_002276_020 Hb_001366_180 Hb_001366_180 Hb_001369_750--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001369_750--Hb_006274_030 Hb_002496_020 Hb_002496_020 Hb_001369_750--Hb_002496_020 Hb_032258_030 Hb_032258_030 Hb_009658_020--Hb_032258_030 Hb_002893_080 Hb_002893_080 Hb_009658_020--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_009658_020--Hb_000103_080 Hb_009658_020--Hb_155159_030 Hb_001975_140 Hb_001975_140 Hb_009658_020--Hb_001975_140 Hb_001579_220 Hb_001579_220 Hb_009658_020--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4923 22.1715 6.30963 31.4271 44.4423 58.912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1949 42.8741 31.8778 39.0745 78.8665

CAGE analysis