Hb_002188_130

Information

Type -
Description -
Location Contig2188: 148488-161239
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29740g
description POPTRDRAFT_1069760; hypothetical protein
nr
ID XP_012093164.1
description PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16376 PE=4 SV=1
Gene Ontology
ID GO:0008152
description ribosomal rna small subunit methyltransferase e isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22553: 147796-148471 , PASA_asmbl_22554: 148674-161269 , PASA_asmbl_22556: 156522-156992
cDNA
(Sanger)
(ID:Location)		 046_I12.ab1: 148674-161269

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_130 0.0 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
2 Hb_005000_210 0.0751587311 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
3 Hb_001269_680 0.0795217358 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
4 Hb_005147_100 0.0847764075 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000230_200 0.0876365695 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
6 Hb_004678_040 0.0910314366 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_000141_040 0.0913413947 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
8 Hb_002968_060 0.0921649717 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
9 Hb_002685_140 0.0923871919 - - PREDICTED: membrin-11 [Jatropha curcas]
10 Hb_001360_040 0.0928582782 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
11 Hb_003069_010 0.0940231956 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
12 Hb_001662_070 0.094682082 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
13 Hb_002784_050 0.0967629666 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
14 Hb_000139_410 0.0975710121 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
15 Hb_000123_120 0.098744925 - - actin depolymerizing factor 4 [Hevea brasiliensis]
16 Hb_112798_030 0.0988494012 - - conserved hypothetical protein [Ricinus communis]
17 Hb_025645_010 0.0990472204 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
18 Hb_033153_050 0.1003777143 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
19 Hb_001357_180 0.1005072782 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
20 Hb_005186_050 0.1008530275 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]

Gene co-expression network

sample Hb_002188_130 Hb_002188_130 Hb_005000_210 Hb_005000_210 Hb_002188_130--Hb_005000_210 Hb_001269_680 Hb_001269_680 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_000139_410 Hb_000139_410 Hb_005000_210--Hb_000139_410 Hb_000866_270 Hb_000866_270 Hb_005000_210--Hb_000866_270 Hb_000367_200 Hb_000367_200 Hb_005000_210--Hb_000367_200 Hb_023226_040 Hb_023226_040 Hb_005000_210--Hb_023226_040 Hb_003078_040 Hb_003078_040 Hb_005000_210--Hb_003078_040 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_002007_060 Hb_002007_060 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_001269_680--Hb_000230_200 Hb_002968_060 Hb_002968_060 Hb_005147_100--Hb_002968_060 Hb_005147_100--Hb_000230_200 Hb_005147_100--Hb_001269_680 Hb_000220_130 Hb_000220_130 Hb_005147_100--Hb_000220_130 Hb_005147_100--Hb_000141_040 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_000230_200--Hb_003001_120 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_000008_470 Hb_000008_470 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_000302_270 Hb_000302_270 Hb_004678_040--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_004678_040--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030 Hb_145880_030 Hb_145880_030 Hb_000141_040--Hb_145880_030 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000141_040--Hb_000866_270 Hb_000141_040--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3272 5.4611 9.14721 7.3456 11.1422 10.3957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0348 14.0154 14.1369 3.61423 3.74611

CAGE analysis