Hb_002192_030

Information

Type -
Description -
Location Contig2192: 49826-50914
Sequence    

Annotation

kegg
ID rcu:RCOM_1754210
description hypothetical protein
nr
ID XP_002513724.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJ05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1754210 PE=4 SV=1
Gene Ontology
ID GO:0005576
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22568: 50011-52162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007286_020 0.1053674975 - - hypothetical protein L484_010675 [Morus notabilis]
3 Hb_131035_010 0.1102982009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000890_230 0.1236353404 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
5 Hb_086639_080 0.1287355156 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027760_070 0.13045741 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
7 Hb_000193_300 0.1343467472 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
8 Hb_012651_010 0.1350140893 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
9 Hb_000260_600 0.1366886048 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002498_050 0.1371615855 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
11 Hb_000130_180 0.1374804145 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
12 Hb_000140_350 0.1387367369 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001014_210 0.1388919325 - - CYP51 [Hevea brasiliensis]
14 Hb_031931_020 0.1391151573 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
15 Hb_001205_110 0.1399691437 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
16 Hb_000984_310 0.1399937378 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
17 Hb_000098_050 0.1401880308 - - BnaCnng11900D [Brassica napus]
18 Hb_002213_040 0.1401924273 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
19 Hb_000331_370 0.1410231439 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
20 Hb_001159_030 0.1413913672 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002192_030 Hb_002192_030 Hb_007286_020 Hb_007286_020 Hb_002192_030--Hb_007286_020 Hb_131035_010 Hb_131035_010 Hb_002192_030--Hb_131035_010 Hb_000890_230 Hb_000890_230 Hb_002192_030--Hb_000890_230 Hb_086639_080 Hb_086639_080 Hb_002192_030--Hb_086639_080 Hb_027760_070 Hb_027760_070 Hb_002192_030--Hb_027760_070 Hb_000193_300 Hb_000193_300 Hb_002192_030--Hb_000193_300 Hb_001051_070 Hb_001051_070 Hb_007286_020--Hb_001051_070 Hb_004102_170 Hb_004102_170 Hb_007286_020--Hb_004102_170 Hb_007286_020--Hb_086639_080 Hb_010042_030 Hb_010042_030 Hb_007286_020--Hb_010042_030 Hb_000679_100 Hb_000679_100 Hb_007286_020--Hb_000679_100 Hb_002486_050 Hb_002486_050 Hb_007286_020--Hb_002486_050 Hb_000035_200 Hb_000035_200 Hb_131035_010--Hb_000035_200 Hb_131035_010--Hb_007286_020 Hb_001500_110 Hb_001500_110 Hb_131035_010--Hb_001500_110 Hb_131035_010--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_131035_010--Hb_146081_010 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_012651_010 Hb_012651_010 Hb_000890_230--Hb_012651_010 Hb_000139_530 Hb_000139_530 Hb_086639_080--Hb_000139_530 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_086639_080--Hb_000002_480 Hb_086639_080--Hb_000331_370 Hb_086639_080--Hb_004102_170 Hb_030736_070 Hb_030736_070 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_000457_140 Hb_000457_140 Hb_027760_070--Hb_000457_140 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_027760_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_027760_070--Hb_008143_070 Hb_026740_020 Hb_026740_020 Hb_000193_300--Hb_026740_020 Hb_000413_020 Hb_000413_020 Hb_000193_300--Hb_000413_020 Hb_001946_180 Hb_001946_180 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_001347_050 Hb_001347_050 Hb_000193_300--Hb_001347_050 Hb_000085_260 Hb_000085_260 Hb_000193_300--Hb_000085_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27082 4.14539 2.24426 11.7886 3.85997 3.75328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68792 1.54294 1.72632 4.66622 2.95324

CAGE analysis