Hb_002192_090

Information

Type -
Description -
Location Contig2192: 109285-113216
Sequence    

Annotation

kegg
ID atr:s00029p00055000
description AMTR_s00029p00055000; hypothetical protein
nr
ID ERN09415.1
description hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
swissprot
ID P36967
description Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3
trembl
ID W1PQC2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00029p00055000 PE=3 SV=1
Gene Ontology
ID GO:0003878
description probable succinyl- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22570: 91057-129966
cDNA
(Sanger)
(ID:Location)		 003_M04.ab1: 91057-109744 , 008_I10.ab1: 91187-109746 , 012_N07.ab1: 91154-109773 , 040_F14.ab1: 91187-112251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_090 0.0 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
2 Hb_133724_010 0.0879929111 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001518_070 0.1128786457 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002388_010 0.1263360825 - - -
5 Hb_001747_030 0.1313126603 - - hypothetical protein F383_08210 [Gossypium arboreum]
6 Hb_000053_030 0.1327944736 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
7 Hb_099878_050 0.1358452605 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
8 Hb_146675_010 0.1383461644 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
9 Hb_001135_140 0.1384999297 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
10 Hb_001623_300 0.1404559136 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
11 Hb_075764_010 0.1441740374 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
12 Hb_001623_290 0.1441748293 - - unknown [Populus trichocarpa]
13 Hb_010964_020 0.1497984189 - - RNA helicase [Arabidopsis thaliana]
14 Hb_000635_070 0.149932712 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
15 Hb_003371_170 0.1502664331 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002687_080 0.1507479133 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
17 Hb_000111_030 0.151326505 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
18 Hb_066913_010 0.1539745292 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
19 Hb_000481_050 0.1551683055 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
20 Hb_000342_160 0.1560988666 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_002192_090 Hb_002192_090 Hb_133724_010 Hb_133724_010 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002388_010 Hb_002388_010 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_000053_030 Hb_000053_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050 Hb_133724_010--Hb_002388_010 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_133724_010--Hb_001518_070 Hb_001518_070--Hb_000053_030 Hb_010964_020 Hb_010964_020 Hb_001518_070--Hb_010964_020 Hb_001518_070--Hb_002388_010 Hb_000111_030 Hb_000111_030 Hb_001518_070--Hb_000111_030 Hb_002388_010--Hb_000111_030 Hb_066913_010 Hb_066913_010 Hb_002388_010--Hb_066913_010 Hb_073799_010 Hb_073799_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010 Hb_002133_020 Hb_002133_020 Hb_001747_030--Hb_002133_020 Hb_000125_010 Hb_000125_010 Hb_001747_030--Hb_000125_010 Hb_000635_070 Hb_000635_070 Hb_001747_030--Hb_000635_070 Hb_072922_010 Hb_072922_010 Hb_001747_030--Hb_072922_010 Hb_001747_030--Hb_000111_030 Hb_002960_130 Hb_002960_130 Hb_001747_030--Hb_002960_130 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_000053_030--Hb_099878_050 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_099878_050--Hb_013358_090 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.041 83.7034 121.174 468.484 75.2513 371.398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.082 149.581 80.9513 55.7242 37.8093

CAGE analysis