Hb_002193_010

Information

Type -
Description -
Location Contig2193: 11330-12484
Sequence    

Annotation

kegg
ID rcu:RCOM_0342710
description hypothetical protein
nr
ID XP_012092514.1
description PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q9FF75
description Protein SAD1/UNC-84 domain protein 1 OS=Arabidopsis thaliana GN=SUN1 PE=1 SV=1
trembl
ID A0A067J9Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04204 PE=4 SV=1
Gene Ontology
ID GO:0046872
description sun domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22573: 11292-11412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002193_010 0.0 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
2 Hb_002276_060 0.0934262171 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
3 Hb_012286_010 0.0994461726 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
4 Hb_000170_190 0.1005802793 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
5 Hb_003406_040 0.103439658 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
6 Hb_003001_150 0.1038544682 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000729_050 0.107239264 - - Pinin, putative [Ricinus communis]
8 Hb_000184_110 0.1082596514 - - hypothetical protein F383_18769 [Gossypium arboreum]
9 Hb_011316_110 0.1084684454 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
10 Hb_000300_580 0.1098977613 - - PREDICTED: importin-5-like [Jatropha curcas]
11 Hb_002174_060 0.1126097471 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
12 Hb_005396_130 0.1127327406 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
13 Hb_000179_020 0.1128483754 - - amidase, putative [Ricinus communis]
14 Hb_005488_060 0.1142449752 - - cytochrome P450, putative [Ricinus communis]
15 Hb_003363_010 0.1164295016 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002025_200 0.1167684317 - - -
17 Hb_011794_060 0.1172019914 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_028487_110 0.1178311501 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
19 Hb_010436_030 0.119823947 - - Ribonuclease III, putative [Ricinus communis]
20 Hb_123777_030 0.12053264 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002193_010 Hb_002193_010 Hb_002276_060 Hb_002276_060 Hb_002193_010--Hb_002276_060 Hb_012286_010 Hb_012286_010 Hb_002193_010--Hb_012286_010 Hb_000170_190 Hb_000170_190 Hb_002193_010--Hb_000170_190 Hb_003406_040 Hb_003406_040 Hb_002193_010--Hb_003406_040 Hb_003001_150 Hb_003001_150 Hb_002193_010--Hb_003001_150 Hb_000729_050 Hb_000729_050 Hb_002193_010--Hb_000729_050 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_002276_060--Hb_003001_150 Hb_002276_060--Hb_012286_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_008489_020 Hb_008489_020 Hb_012286_010--Hb_008489_020 Hb_012286_010--Hb_000170_190 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_123777_030 Hb_123777_030 Hb_003406_040--Hb_123777_030 Hb_004096_020 Hb_004096_020 Hb_003406_040--Hb_004096_020 Hb_001871_040 Hb_001871_040 Hb_003406_040--Hb_001871_040 Hb_000005_380 Hb_000005_380 Hb_003406_040--Hb_000005_380 Hb_002150_030 Hb_002150_030 Hb_003406_040--Hb_002150_030 Hb_007407_040 Hb_007407_040 Hb_003406_040--Hb_007407_040 Hb_003544_100 Hb_003544_100 Hb_003001_150--Hb_003544_100 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_000184_110 Hb_000184_110 Hb_000729_050--Hb_000184_110 Hb_000729_050--Hb_007407_040 Hb_011316_110 Hb_011316_110 Hb_000729_050--Hb_011316_110 Hb_004452_100 Hb_004452_100 Hb_000729_050--Hb_004452_100 Hb_008143_030 Hb_008143_030 Hb_000729_050--Hb_008143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6036 13.5867 9.17438 11.8633 56.8368 68.0121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.39 16.4051 35.1709 15.3496 41.1904

CAGE analysis