Hb_002193_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2193: 30054-32595
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05640g
description hypothetical protein
nr
ID XP_012073040.1
description PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
swissprot
ID Q66GR3
description Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1
trembl
ID A0A067KZT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06818 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh130-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22576: 31285-32237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002193_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
2 Hb_001195_200 0.0957486969 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
3 Hb_000917_230 0.0993242228 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
4 Hb_000327_180 0.0993545423 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
5 Hb_003465_030 0.1010542834 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002994_030 0.1029883587 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
7 Hb_001268_410 0.1069457811 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
8 Hb_000510_240 0.1070193167 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
9 Hb_000483_300 0.10780506 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
10 Hb_000210_120 0.1079359796 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
11 Hb_005188_080 0.1091873543 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_000212_290 0.1108990395 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
13 Hb_001489_090 0.1154222206 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
14 Hb_029584_050 0.1154851721 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
15 Hb_001301_110 0.1160256983 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
16 Hb_000053_020 0.1167840599 - - F-box and wd40 domain protein, putative [Ricinus communis]
17 Hb_002301_180 0.1172054399 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
18 Hb_004157_050 0.1185230029 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
19 Hb_012627_040 0.1208888021 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
20 Hb_001222_080 0.1211354916 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002193_030 Hb_002193_030 Hb_001195_200 Hb_001195_200 Hb_002193_030--Hb_001195_200 Hb_000917_230 Hb_000917_230 Hb_002193_030--Hb_000917_230 Hb_000327_180 Hb_000327_180 Hb_002193_030--Hb_000327_180 Hb_003465_030 Hb_003465_030 Hb_002193_030--Hb_003465_030 Hb_002994_030 Hb_002994_030 Hb_002193_030--Hb_002994_030 Hb_001268_410 Hb_001268_410 Hb_002193_030--Hb_001268_410 Hb_000982_080 Hb_000982_080 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_001489_090 Hb_001489_090 Hb_001195_200--Hb_001489_090 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_000327_180--Hb_005054_110 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_003465_030--Hb_001489_090 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_002994_030--Hb_000078_120 Hb_000948_160 Hb_000948_160 Hb_002994_030--Hb_000948_160 Hb_000696_330 Hb_000696_330 Hb_002994_030--Hb_000696_330 Hb_189216_020 Hb_189216_020 Hb_002994_030--Hb_189216_020 Hb_006831_140 Hb_006831_140 Hb_002994_030--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002994_030--Hb_001470_030 Hb_029584_050 Hb_029584_050 Hb_001268_410--Hb_029584_050 Hb_002400_410 Hb_002400_410 Hb_001268_410--Hb_002400_410 Hb_119530_010 Hb_119530_010 Hb_001268_410--Hb_119530_010 Hb_001268_410--Hb_000327_180 Hb_005396_150 Hb_005396_150 Hb_001268_410--Hb_005396_150 Hb_001268_410--Hb_000917_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27552 5.55469 3.02217 5.09092 2.8056 4.39741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0327 8.91463 5.15623 7.92698 8.07838

CAGE analysis