Hb_002193_070

Information

Type -
Description -
Location Contig2193: 68780-69769
Sequence    

Annotation

kegg
ID rcu:RCOM_0404940
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002532396.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q05091
description Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1
trembl
ID B9T2C7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0404940 PE=4 SV=1
Gene Ontology
ID GO:0005515
description polygalacturonase-inhibiting protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22578: 68588-69735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002193_070 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_012565_010 0.1511842248 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
3 Hb_009010_040 0.1704849583 - - Peptide transporter, putative [Ricinus communis]
4 Hb_002675_170 0.177477396 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
5 Hb_003360_050 0.1861206694 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_011900_040 0.1973505251 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
7 Hb_001335_040 0.1973961687 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000389_040 0.2076589397 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
9 Hb_001998_100 0.2133720863 - - -
10 Hb_000995_020 0.2241197301 - - conserved hypothetical protein [Ricinus communis]
11 Hb_153774_010 0.2260131117 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000617_300 0.2321231223 - - RALFL33, putative [Ricinus communis]
13 Hb_000152_730 0.2344416494 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005479_050 0.2345484777 - - -
15 Hb_000083_260 0.2398153347 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001163_140 0.2412556082 - - -
17 Hb_009111_060 0.243281761 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
18 Hb_002316_010 0.2445861467 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
19 Hb_102772_010 0.2459491317 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007311_050 0.2472768018 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002193_070 Hb_002193_070 Hb_012565_010 Hb_012565_010 Hb_002193_070--Hb_012565_010 Hb_009010_040 Hb_009010_040 Hb_002193_070--Hb_009010_040 Hb_002675_170 Hb_002675_170 Hb_002193_070--Hb_002675_170 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_011900_040 Hb_011900_040 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_012565_010--Hb_002675_170 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_000617_300 Hb_000617_300 Hb_012565_010--Hb_000617_300 Hb_009111_060 Hb_009111_060 Hb_009010_040--Hb_009111_060 Hb_001998_100 Hb_001998_100 Hb_009010_040--Hb_001998_100 Hb_005356_050 Hb_005356_050 Hb_009010_040--Hb_005356_050 Hb_153774_010 Hb_153774_010 Hb_009010_040--Hb_153774_010 Hb_031822_020 Hb_031822_020 Hb_009010_040--Hb_031822_020 Hb_002675_170--Hb_011900_040 Hb_002675_170--Hb_005455_100 Hb_002675_170--Hb_001335_040 Hb_010833_010 Hb_010833_010 Hb_002675_170--Hb_010833_010 Hb_003360_050--Hb_001998_100 Hb_003360_050--Hb_009010_040 Hb_003014_010 Hb_003014_010 Hb_003360_050--Hb_003014_010 Hb_000042_180 Hb_000042_180 Hb_003360_050--Hb_000042_180 Hb_003360_050--Hb_153774_010 Hb_000083_260 Hb_000083_260 Hb_011900_040--Hb_000083_260 Hb_011900_040--Hb_001335_040 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_019053_050 Hb_019053_050 Hb_001335_040--Hb_019053_050 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196052 1.62012 5.95365 137.484 0.19193 0.564092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.359207 2.01794 20.415 2.43512 6.27034

CAGE analysis