Hb_002194_050

Information

Type -
Description -
Location Contig2194: 25082-27699
Sequence    

Annotation

kegg
ID rcu:RCOM_1615110
description hypothetical protein
nr
ID XP_012083409.1
description PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
swissprot
ID Q9M2D2
description UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2
trembl
ID A0A067K8P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14411 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22584: 25298-26349 , PASA_asmbl_22585: 25716-26661 , PASA_asmbl_22586: 25492-26659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002194_050 0.0 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
2 Hb_008375_030 0.0956382843 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
3 Hb_009771_060 0.1115974527 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
4 Hb_004129_090 0.1225189902 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
5 Hb_001776_210 0.1281342697 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_004994_080 0.1306932926 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_002876_300 0.1324057172 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
8 Hb_000160_140 0.1337077754 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
9 Hb_155025_010 0.1340362431 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_014497_100 0.1353072527 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
11 Hb_002218_020 0.1366000413 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_007451_040 0.1367335573 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
13 Hb_000035_250 0.1382858354 - - PREDICTED: uncharacterized protein LOC105637544 [Jatropha curcas]
14 Hb_004225_060 0.1386098202 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
15 Hb_029622_120 0.1387933257 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
16 Hb_005946_040 0.1394749817 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
17 Hb_005494_010 0.1399627006 - - catalytic, putative [Ricinus communis]
18 Hb_006588_190 0.140959621 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
19 Hb_001178_010 0.1414251939 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
20 Hb_005332_080 0.1419701276 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002194_050 Hb_002194_050 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_001623_490 Hb_001623_490 Hb_008375_030--Hb_001623_490 Hb_005665_090 Hb_005665_090 Hb_008375_030--Hb_005665_090 Hb_002218_020 Hb_002218_020 Hb_008375_030--Hb_002218_020 Hb_012779_080 Hb_012779_080 Hb_008375_030--Hb_012779_080 Hb_012438_030 Hb_012438_030 Hb_008375_030--Hb_012438_030 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_007263_010 Hb_007263_010 Hb_009771_060--Hb_007263_010 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_000152_180 Hb_000152_180 Hb_009771_060--Hb_000152_180 Hb_014497_100 Hb_014497_100 Hb_004129_090--Hb_014497_100 Hb_001178_010 Hb_001178_010 Hb_004129_090--Hb_001178_010 Hb_010098_020 Hb_010098_020 Hb_004129_090--Hb_010098_020 Hb_002316_140 Hb_002316_140 Hb_004129_090--Hb_002316_140 Hb_001623_100 Hb_001623_100 Hb_004129_090--Hb_001623_100 Hb_001541_110 Hb_001541_110 Hb_004129_090--Hb_001541_110 Hb_000003_680 Hb_000003_680 Hb_001776_210--Hb_000003_680 Hb_087313_010 Hb_087313_010 Hb_001776_210--Hb_087313_010 Hb_000352_350 Hb_000352_350 Hb_001776_210--Hb_000352_350 Hb_002893_040 Hb_002893_040 Hb_001776_210--Hb_002893_040 Hb_001500_120 Hb_001500_120 Hb_001776_210--Hb_001500_120 Hb_003506_030 Hb_003506_030 Hb_001776_210--Hb_003506_030 Hb_004994_080--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_000181_060 Hb_000181_060 Hb_004994_080--Hb_000181_060 Hb_011386_050 Hb_011386_050 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_006555_040 Hb_006555_040 Hb_004994_080--Hb_006555_040 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_002876_300--Hb_012438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22065 4.48735 11.02 3.08143 1.44054 2.04519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92954 4.58658 0.650884 2.54649 5.41259

CAGE analysis