Hb_002194_090

Information

Type -
Description -
Location Contig2194: 47019-49431
Sequence    

Annotation

kegg
ID rcu:RCOM_1028070
description nucleic acid binding protein, putative
nr
ID XP_002526391.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q28C44
description CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1
trembl
ID B9SK72
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1028070 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cwf19-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22587: 47058-49421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002194_090 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000069_170 0.1305386475 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
3 Hb_000130_050 0.1485132025 - - 14-3-3 protein, putative [Ricinus communis]
4 Hb_000805_290 0.1706298739 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
5 Hb_001662_060 0.1724584624 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
6 Hb_003680_190 0.1830484137 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
7 Hb_002272_280 0.183217862 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_000108_070 0.1836390643 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_000792_090 0.185545636 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
10 Hb_001897_040 0.1866117598 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
11 Hb_005569_020 0.1888595764 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006711_060 0.1904723542 - - Tubulin beta-1 chain [Morus notabilis]
13 Hb_000096_010 0.1913663382 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
14 Hb_004884_160 0.1947692183 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
15 Hb_017110_010 0.195033579 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
16 Hb_007765_020 0.1975322873 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
17 Hb_001014_040 0.1976314602 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
18 Hb_000749_270 0.1980698812 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
19 Hb_000712_050 0.1983826718 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
20 Hb_004738_040 0.2002623909 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002194_090 Hb_002194_090 Hb_000069_170 Hb_000069_170 Hb_002194_090--Hb_000069_170 Hb_000130_050 Hb_000130_050 Hb_002194_090--Hb_000130_050 Hb_000805_290 Hb_000805_290 Hb_002194_090--Hb_000805_290 Hb_001662_060 Hb_001662_060 Hb_002194_090--Hb_001662_060 Hb_003680_190 Hb_003680_190 Hb_002194_090--Hb_003680_190 Hb_002272_280 Hb_002272_280 Hb_002194_090--Hb_002272_280 Hb_031862_130 Hb_031862_130 Hb_000069_170--Hb_031862_130 Hb_000215_080 Hb_000215_080 Hb_000069_170--Hb_000215_080 Hb_000069_170--Hb_001662_060 Hb_007765_020 Hb_007765_020 Hb_000069_170--Hb_007765_020 Hb_008695_140 Hb_008695_140 Hb_000069_170--Hb_008695_140 Hb_000096_010 Hb_000096_010 Hb_000130_050--Hb_000096_010 Hb_001014_040 Hb_001014_040 Hb_000130_050--Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_000130_050--Hb_000108_070 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_004079_030 Hb_004079_030 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060 Hb_004738_040 Hb_004738_040 Hb_000805_290--Hb_004738_040 Hb_001897_040 Hb_001897_040 Hb_000805_290--Hb_001897_040 Hb_003943_040 Hb_003943_040 Hb_000805_290--Hb_003943_040 Hb_017110_010 Hb_017110_010 Hb_000805_290--Hb_017110_010 Hb_176681_010 Hb_176681_010 Hb_000805_290--Hb_176681_010 Hb_000622_090 Hb_000622_090 Hb_000805_290--Hb_000622_090 Hb_001662_060--Hb_007765_020 Hb_001662_060--Hb_004079_030 Hb_008159_010 Hb_008159_010 Hb_001662_060--Hb_008159_010 Hb_000059_050 Hb_000059_050 Hb_001662_060--Hb_000059_050 Hb_001662_060--Hb_000130_050 Hb_000092_010 Hb_000092_010 Hb_001662_060--Hb_000092_010 Hb_000690_050 Hb_000690_050 Hb_003680_190--Hb_000690_050 Hb_000629_120 Hb_000629_120 Hb_003680_190--Hb_000629_120 Hb_000363_160 Hb_000363_160 Hb_003680_190--Hb_000363_160 Hb_000359_010 Hb_000359_010 Hb_003680_190--Hb_000359_010 Hb_000898_050 Hb_000898_050 Hb_003680_190--Hb_000898_050 Hb_000297_040 Hb_000297_040 Hb_003680_190--Hb_000297_040 Hb_009646_040 Hb_009646_040 Hb_002272_280--Hb_009646_040 Hb_011377_050 Hb_011377_050 Hb_002272_280--Hb_011377_050 Hb_000019_070 Hb_000019_070 Hb_002272_280--Hb_000019_070 Hb_000638_170 Hb_000638_170 Hb_002272_280--Hb_000638_170 Hb_002272_280--Hb_000161_060 Hb_000521_130 Hb_000521_130 Hb_002272_280--Hb_000521_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77844 0.739457 2.74593 6.192 3.09297 2.54668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66768 2.61182 12.0587 1.64116 0.440962

CAGE analysis