Hb_002196_020

Information

Type -
Description -
Location Contig2196: 86539-88158
Sequence    

Annotation

kegg
ID rcu:RCOM_0803090
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002516576.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49343
description Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1
trembl
ID B9RS57
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0803090 PE=4 SV=1
Gene Ontology
ID GO:0030117
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22593: 83435-88205 , PASA_asmbl_22594: 82350-88205 , PASA_asmbl_22595: 87279-88163
cDNA
(Sanger)
(ID:Location)		 039_O02.ab1: 87926-88163

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002196_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000318_510 0.0801533389 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
3 Hb_000321_070 0.0854180748 - - protein with unknown function [Ricinus communis]
4 Hb_000160_040 0.0924822674 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
5 Hb_067345_010 0.0926007188 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
6 Hb_006332_010 0.0927342168 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
7 Hb_000915_050 0.0930958958 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000207_390 0.0939737296 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
9 Hb_004204_020 0.0957166983 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
10 Hb_027028_020 0.096904656 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
11 Hb_003090_080 0.0976731056 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
12 Hb_001484_120 0.0981963838 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
13 Hb_009838_100 0.0984726623 - - hypothetical protein RCOM_1217340 [Ricinus communis]
14 Hb_002759_280 0.0999540731 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
15 Hb_000184_130 0.1007225281 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
16 Hb_001047_030 0.1019348093 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
17 Hb_025012_010 0.1023281978 - - PREDICTED: importin-4 [Vitis vinifera]
18 Hb_001301_200 0.1025532792 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
19 Hb_028639_010 0.1044643259 - - transporter, putative [Ricinus communis]
20 Hb_007163_090 0.1047617684 - - PREDICTED: protein spt2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002196_020 Hb_002196_020 Hb_000318_510 Hb_000318_510 Hb_002196_020--Hb_000318_510 Hb_000321_070 Hb_000321_070 Hb_002196_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_002196_020--Hb_000160_040 Hb_067345_010 Hb_067345_010 Hb_002196_020--Hb_067345_010 Hb_006332_010 Hb_006332_010 Hb_002196_020--Hb_006332_010 Hb_000915_050 Hb_000915_050 Hb_002196_020--Hb_000915_050 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_001700_040 Hb_001700_040 Hb_000318_510--Hb_001700_040 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000347_180 Hb_000347_180 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_000085_160 Hb_000085_160 Hb_000321_070--Hb_000085_160 Hb_001790_020 Hb_001790_020 Hb_000321_070--Hb_001790_020 Hb_001571_040 Hb_001571_040 Hb_000321_070--Hb_001571_040 Hb_000245_130 Hb_000245_130 Hb_000321_070--Hb_000245_130 Hb_000103_180 Hb_000103_180 Hb_000321_070--Hb_000103_180 Hb_039837_010 Hb_039837_010 Hb_000321_070--Hb_039837_010 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_001617_060 Hb_001617_060 Hb_067345_010--Hb_001617_060 Hb_025012_010 Hb_025012_010 Hb_067345_010--Hb_025012_010 Hb_005679_050 Hb_005679_050 Hb_067345_010--Hb_005679_050 Hb_029142_010 Hb_029142_010 Hb_067345_010--Hb_029142_010 Hb_000347_130 Hb_000347_130 Hb_067345_010--Hb_000347_130 Hb_000613_080 Hb_000613_080 Hb_067345_010--Hb_000613_080 Hb_004447_060 Hb_004447_060 Hb_006332_010--Hb_004447_060 Hb_006332_010--Hb_007163_090 Hb_148644_010 Hb_148644_010 Hb_006332_010--Hb_148644_010 Hb_002811_360 Hb_002811_360 Hb_006332_010--Hb_002811_360 Hb_004767_100 Hb_004767_100 Hb_006332_010--Hb_004767_100 Hb_001301_200 Hb_001301_200 Hb_006332_010--Hb_001301_200 Hb_003362_040 Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4445 2.55403 0.963884 2.92293 4.33425 6.96161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55535 3.07612 3.86026 3.80388 1.07383

CAGE analysis