Hb_002197_010

Information

Type -
Description -
Location Contig2197: 17761-19804
Sequence    

Annotation

kegg
ID rcu:RCOM_0811920
description cyclin d, putative
nr
ID XP_002518702.1
description cyclin d, putative [Ricinus communis]
swissprot
ID P42753
description Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
trembl
ID B9RYB8
description Cyclin d, putative OS=Ricinus communis GN=RCOM_0811920 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d3-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22596: 17931-19783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002197_010 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_001210_030 0.0328596649 - - PREDICTED: plectin [Jatropha curcas]
3 Hb_005649_050 0.0846695832 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002473_030 0.0888750131 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
5 Hb_003398_050 0.104558667 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
6 Hb_001220_020 0.1054989881 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_162378_020 0.1086689508 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
8 Hb_004963_020 0.1116258494 - - PREDICTED: patellin-4 [Populus euphratica]
9 Hb_001235_040 0.1122383036 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
10 Hb_004032_390 0.1126951566 - - CDK, putative [Ricinus communis]
11 Hb_002374_090 0.115402604 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
12 Hb_003776_050 0.1154297337 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_000614_200 0.1159916507 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
14 Hb_011063_030 0.1171871862 - - protein with unknown function [Ricinus communis]
15 Hb_001564_100 0.1177233823 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_000421_060 0.119822265 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
17 Hb_006788_130 0.1205918347 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
18 Hb_064396_010 0.121847664 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_004174_030 0.1220411648 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
20 Hb_002928_150 0.1225033862 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002197_010 Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_002197_010--Hb_001210_030 Hb_005649_050 Hb_005649_050 Hb_002197_010--Hb_005649_050 Hb_002473_030 Hb_002473_030 Hb_002197_010--Hb_002473_030 Hb_003398_050 Hb_003398_050 Hb_002197_010--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_002197_010--Hb_001220_020 Hb_162378_020 Hb_162378_020 Hb_002197_010--Hb_162378_020 Hb_001210_030--Hb_005649_050 Hb_001210_030--Hb_002473_030 Hb_001210_030--Hb_003398_050 Hb_001210_030--Hb_001220_020 Hb_001210_030--Hb_162378_020 Hb_005649_050--Hb_002473_030 Hb_004963_020 Hb_004963_020 Hb_005649_050--Hb_004963_020 Hb_002837_030 Hb_002837_030 Hb_005649_050--Hb_002837_030 Hb_005649_050--Hb_162378_020 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_002473_030--Hb_001220_020 Hb_002473_030--Hb_002837_030 Hb_002473_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_001220_020 Hb_003776_050 Hb_003776_050 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100701 0.545952 39.9617 10.5298 0.0378306 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0225451 1.06186 1.86998 1.22999

CAGE analysis