Hb_002197_020

Information

Type -
Description -
Location Contig2197: 30129-35283
Sequence    

Annotation

kegg
ID tcc:TCM_007121
description DNA-directed RNA polymerase family protein
nr
ID XP_007042502.1
description DNA-directed RNA polymerase family protein [Theobroma cacao]
swissprot
ID Q39211
description DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1
trembl
ID A0A061E7U0
description DNA-directed RNA polymerase family protein OS=Theobroma cacao GN=TCM_007121 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerases iv and v subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22597: 29907-35229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002197_020 0.0 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
2 Hb_000141_250 0.0724208519 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
3 Hb_000039_220 0.0739135455 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
4 Hb_007982_080 0.073993885 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
5 Hb_000185_070 0.0767395541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001981_030 0.0768340137 - - nuclear acid binding protein, putative [Ricinus communis]
7 Hb_002872_030 0.0768873541 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_021576_100 0.0779221002 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
9 Hb_002686_170 0.0779935546 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
10 Hb_011995_010 0.0791344855 - - dc50, putative [Ricinus communis]
11 Hb_001357_350 0.0808939531 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005000_190 0.0813140562 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
13 Hb_001012_010 0.0831165659 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
14 Hb_010381_090 0.0839869167 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
15 Hb_027428_010 0.0848665008 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
16 Hb_008511_130 0.0855017765 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
17 Hb_000345_380 0.0856973149 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_009545_080 0.0858259384 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
19 Hb_007416_300 0.085873534 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
20 Hb_004046_050 0.0858782129 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002197_020 Hb_002197_020 Hb_000141_250 Hb_000141_250 Hb_002197_020--Hb_000141_250 Hb_000039_220 Hb_000039_220 Hb_002197_020--Hb_000039_220 Hb_007982_080 Hb_007982_080 Hb_002197_020--Hb_007982_080 Hb_000185_070 Hb_000185_070 Hb_002197_020--Hb_000185_070 Hb_001981_030 Hb_001981_030 Hb_002197_020--Hb_001981_030 Hb_002872_030 Hb_002872_030 Hb_002197_020--Hb_002872_030 Hb_008511_130 Hb_008511_130 Hb_000141_250--Hb_008511_130 Hb_000230_560 Hb_000230_560 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_001133_120 Hb_001133_120 Hb_000039_220--Hb_001133_120 Hb_000768_090 Hb_000768_090 Hb_000039_220--Hb_000768_090 Hb_002303_070 Hb_002303_070 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_020367_050 Hb_020367_050 Hb_007982_080--Hb_020367_050 Hb_007982_080--Hb_005288_150 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_000185_070--Hb_002872_030 Hb_005000_190 Hb_005000_190 Hb_001981_030--Hb_005000_190 Hb_002686_170 Hb_002686_170 Hb_001981_030--Hb_002686_170 Hb_001153_190 Hb_001153_190 Hb_001981_030--Hb_001153_190 Hb_000915_180 Hb_000915_180 Hb_001981_030--Hb_000915_180 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_002872_030--Hb_073973_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.7305 40.2885 80.6421 43.6174 50.8072 68.2699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.8901 49.1295 62.8695 45.7465 27.9771

CAGE analysis