Hb_002197_050

Information

Type -
Description -
Location Contig2197: 90411-92479
Sequence    

Annotation

kegg
ID cic:CICLE_v10002157mg
description hypothetical protein
nr
ID XP_006432769.1
description hypothetical protein CICLE_v10002157mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4V2E0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002157mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable inactive serine threonine-protein kinase fnkc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22600: 90561-91663 , PASA_asmbl_22601: 91771-92364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002197_050 0.0 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
2 Hb_000137_090 0.0666656166 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
3 Hb_000948_160 0.0680637122 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
4 Hb_000431_170 0.0681426632 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
5 Hb_000003_320 0.0719196561 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
6 Hb_000312_080 0.0719844044 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
7 Hb_031340_050 0.0746653384 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
8 Hb_001357_250 0.0754419072 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
9 Hb_012490_070 0.0763205189 - - conserved hypothetical protein [Ricinus communis]
10 Hb_031862_100 0.0763917405 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_033642_090 0.0765743797 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002481_080 0.0773569166 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
13 Hb_023732_030 0.0779939629 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
14 Hb_001314_050 0.080814827 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
15 Hb_000589_120 0.0810501758 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
16 Hb_005725_270 0.0813392483 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
17 Hb_000460_030 0.0824885018 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
18 Hb_000392_430 0.0832166482 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
19 Hb_000907_110 0.0840917304 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
20 Hb_003294_070 0.0851350474 - - hypothetical protein RCOM_1714550 [Ricinus communis]

Gene co-expression network

sample Hb_002197_050 Hb_002197_050 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_000137_090--Hb_031340_050 Hb_001357_250 Hb_001357_250 Hb_000137_090--Hb_001357_250 Hb_000031_120 Hb_000031_120 Hb_000137_090--Hb_000031_120 Hb_000139_290 Hb_000139_290 Hb_000137_090--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000137_090--Hb_001009_250 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_000181_400 Hb_000181_400 Hb_000003_320--Hb_000181_400 Hb_003294_070 Hb_003294_070 Hb_000003_320--Hb_003294_070 Hb_000556_160 Hb_000556_160 Hb_000003_320--Hb_000556_160 Hb_002078_350 Hb_002078_350 Hb_000003_320--Hb_002078_350 Hb_007416_120 Hb_007416_120 Hb_000003_320--Hb_007416_120 Hb_001215_040 Hb_001215_040 Hb_000312_080--Hb_001215_040 Hb_000312_080--Hb_000431_170 Hb_005914_170 Hb_005914_170 Hb_000312_080--Hb_005914_170 Hb_005588_060 Hb_005588_060 Hb_000312_080--Hb_005588_060 Hb_003813_050 Hb_003813_050 Hb_000312_080--Hb_003813_050 Hb_031340_050--Hb_001357_250 Hb_001579_220 Hb_001579_220 Hb_031340_050--Hb_001579_220 Hb_000252_170 Hb_000252_170 Hb_031340_050--Hb_000252_170 Hb_023732_030 Hb_023732_030 Hb_031340_050--Hb_023732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1163 9.34033 10.7993 12.2078 13.6943 13.2637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4311 22.6417 14.3667 23.3302 10.2785

CAGE analysis