Hb_002200_010

Information

Type -
Description -
Location Contig2200: 7829-8435
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21140g
description POPTRDRAFT_559346; hypothetical protein
nr
ID XP_012066059.1
description PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LET5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25216 PE=4 SV=1
Gene Ontology
ID GO:0016023
description sperm acrosomal protein fsa- -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_010 0.0 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
2 Hb_000057_030 0.0004843918 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000286_250 0.0017094705 desease resistance Gene Name: NB-ARC -
4 Hb_170761_010 0.0022966829 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
5 Hb_002081_250 0.0023965186 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
6 Hb_110822_020 0.0029539203 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_011495_020 0.0126099808 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_021931_030 0.0155165382 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_161981_020 0.0206806389 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006124_010 0.0273934466 - - -
11 Hb_176138_010 0.0396386501 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.039877714 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_180483_010 0.0439649565 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_005780_010 0.0445486406 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_022693_100 0.0448273883 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
16 Hb_169426_010 0.0448407295 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000866_480 0.0457024944 - - -
18 Hb_000329_410 0.0459306851 - - Beta-expansin 3 precursor, putative [Ricinus communis]
19 Hb_000905_140 0.0494707232 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
20 Hb_002997_010 0.0514184842 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]

Gene co-expression network

sample Hb_002200_010 Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_002200_010--Hb_000057_030 Hb_000286_250 Hb_000286_250 Hb_002200_010--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_002200_010--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_002200_010--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_002200_010--Hb_110822_020 Hb_011495_020 Hb_011495_020 Hb_002200_010--Hb_011495_020 Hb_000057_030--Hb_000286_250 Hb_000057_030--Hb_170761_010 Hb_000057_030--Hb_002081_250 Hb_000057_030--Hb_110822_020 Hb_000057_030--Hb_011495_020 Hb_000286_250--Hb_170761_010 Hb_000286_250--Hb_002081_250 Hb_000286_250--Hb_110822_020 Hb_021931_030 Hb_021931_030 Hb_000286_250--Hb_021931_030 Hb_170761_010--Hb_002081_250 Hb_170761_010--Hb_110822_020 Hb_170761_010--Hb_021931_030 Hb_002081_250--Hb_110822_020 Hb_002081_250--Hb_021931_030 Hb_110822_020--Hb_021931_030 Hb_011495_020--Hb_000286_250 Hb_011495_020--Hb_170761_010 Hb_011495_020--Hb_002081_250 Hb_011495_020--Hb_110822_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.38681 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43 0

CAGE analysis