Hb_002200_050

Information

Type -
Description -
Location Contig2200: 51425-51869
Sequence    

Annotation

kegg
ID -
description -
nr
ID AFK45742.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3SZQ0
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0044699
description PREDICTED: uncharacterized protein LOC105629143 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22676: 39677-52030 , PASA_asmbl_22677: 39677-51967
cDNA
(Sanger)
(ID:Location)		 039_K18.ab1: 40730-52028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_050 0.0 - - unknown [Lotus japonicus]
2 Hb_000160_160 0.1225682078 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
3 Hb_003688_110 0.1407759539 - - -
4 Hb_025190_010 0.1490408391 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008447_030 0.1529344361 - - -
6 Hb_025288_010 0.1650185689 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
7 Hb_004709_020 0.1713294044 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
8 Hb_026228_010 0.1733511793 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000656_090 0.1763651401 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
10 Hb_029142_070 0.1811536123 - - -
11 Hb_002200_040 0.1816685451 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
12 Hb_027760_020 0.1863693119 - - hypothetical protein M569_04462, partial [Genlisea aurea]
13 Hb_002562_110 0.1876308554 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
14 Hb_002168_010 0.1895749271 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
15 Hb_005679_070 0.1908956128 - - hypothetical protein M569_07741, partial [Genlisea aurea]
16 Hb_000329_560 0.1929079726 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005694_020 0.1935580316 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
18 Hb_002078_260 0.1951639549 - - unknown [Populus trichocarpa]
19 Hb_041205_010 0.1996546006 - - conserved hypothetical protein [Ricinus communis]
20 Hb_082006_010 0.2012402083 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002200_050 Hb_002200_050 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_025190_010 Hb_025190_010 Hb_002200_050--Hb_025190_010 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_000160_160--Hb_025190_010 Hb_003688_110--Hb_025190_010 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_041205_010 Hb_041205_010 Hb_003688_110--Hb_041205_010 Hb_004235_030 Hb_004235_030 Hb_003688_110--Hb_004235_030 Hb_005085_030 Hb_005085_030 Hb_003688_110--Hb_005085_030 Hb_002482_040 Hb_002482_040 Hb_025190_010--Hb_002482_040 Hb_000174_040 Hb_000174_040 Hb_025190_010--Hb_000174_040 Hb_026228_010 Hb_026228_010 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020 Hb_008447_030--Hb_000656_090 Hb_026745_020 Hb_026745_020 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040 Hb_132180_010 Hb_132180_010 Hb_025288_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_025288_010--Hb_002078_260 Hb_011037_020 Hb_011037_020 Hb_025288_010--Hb_011037_020 Hb_029142_070 Hb_029142_070 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_025288_010--Hb_011214_100 Hb_004303_040 Hb_004303_040 Hb_004709_020--Hb_004303_040 Hb_009270_030 Hb_009270_030 Hb_004709_020--Hb_009270_030 Hb_002562_110 Hb_002562_110 Hb_004709_020--Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_004709_020--Hb_082006_010 Hb_004709_020--Hb_008447_030 Hb_038237_010 Hb_038237_010 Hb_004709_020--Hb_038237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.872505 0.685484 1.05114 16.2828 0.80266 21.4454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7753 8.86098 3.93831 6.16048 11.2714

CAGE analysis