Hb_002200_080

Information

Type -
Description -
Location Contig2200: 64333-71670
Sequence    

Annotation

kegg
ID rcu:RCOM_0137940
description hypothetical protein
nr
ID XP_012066067.1
description PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
swissprot
ID P87055
description Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A10.07 PE=4 SV=1
trembl
ID A0A067L3J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22682: 65056-80086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_080 0.0 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
2 Hb_000010_330 0.0528606894 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
3 Hb_005144_160 0.0546166827 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
4 Hb_019280_040 0.0579381306 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007691_030 0.0657681122 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
6 Hb_003195_070 0.0674024856 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_000085_160 0.0682804506 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
8 Hb_003417_020 0.0736056083 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
9 Hb_000173_290 0.0740366843 - - guanylate kinase, putative [Ricinus communis]
10 Hb_002835_080 0.074570692 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
11 Hb_000120_670 0.0761120003 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
12 Hb_003177_030 0.0762301579 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
13 Hb_007904_200 0.0765829355 - - protein binding protein, putative [Ricinus communis]
14 Hb_003665_060 0.0772094895 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
15 Hb_000808_280 0.0775285243 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001828_190 0.0791400298 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
17 Hb_000451_010 0.0794375072 - - secretory carrier membrane protein, putative [Ricinus communis]
18 Hb_000580_180 0.079519065 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010457_030 0.0801561223 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
20 Hb_008695_180 0.0815092031 - - eukaryotic translation initiation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002200_080 Hb_002200_080 Hb_000010_330 Hb_000010_330 Hb_002200_080--Hb_000010_330 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_019280_040 Hb_019280_040 Hb_002200_080--Hb_019280_040 Hb_007691_030 Hb_007691_030 Hb_002200_080--Hb_007691_030 Hb_003195_070 Hb_003195_070 Hb_002200_080--Hb_003195_070 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_000580_180 Hb_000580_180 Hb_005144_160--Hb_000580_180 Hb_005144_160--Hb_007691_030 Hb_003177_030 Hb_003177_030 Hb_005144_160--Hb_003177_030 Hb_002863_050 Hb_002863_050 Hb_005144_160--Hb_002863_050 Hb_006634_070 Hb_006634_070 Hb_005144_160--Hb_006634_070 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_007691_030--Hb_000580_180 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_003195_070--Hb_000010_330 Hb_003195_070--Hb_007904_200 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_000085_160--Hb_003665_060 Hb_000085_160--Hb_000010_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23065 3.59428 3.06292 6.97361 8.14271 8.06045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94368 8.20117 7.93578 4.91854 4.71986

CAGE analysis