Hb_002200_130

Information

Type -
Description -
Location Contig2200: 109957-117899
Sequence    

Annotation

kegg
ID tcc:TCM_035451
description Vacuolar protein sorting 45
nr
ID XP_012066072.1
description PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
swissprot
ID O49048
description Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2
trembl
ID A0A061FI98
description Vacuolar protein sorting 45 OS=Theobroma cacao GN=TCM_035451 PE=4 SV=1
Gene Ontology
ID GO:0005802
description vacuolar protein sorting-associated protein 45 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22684: 109730-112076 , PASA_asmbl_22685: 109644-117863 , PASA_asmbl_22687: 110907-111062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_130 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
2 Hb_000207_390 0.0606793137 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
3 Hb_003362_040 0.0621983914 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
4 Hb_001301_200 0.0655763609 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_000048_140 0.0682766394 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
6 Hb_028639_010 0.0756506983 - - transporter, putative [Ricinus communis]
7 Hb_001797_050 0.0767073969 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
8 Hb_004204_080 0.0769737934 - - diacylglycerol kinase, theta, putative [Ricinus communis]
9 Hb_023344_030 0.0774746345 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
10 Hb_000034_050 0.0782964578 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
11 Hb_005977_090 0.0791300654 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
12 Hb_000160_040 0.0794363113 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
13 Hb_001047_030 0.0795410379 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
14 Hb_009627_010 0.0803799132 - - Protein dom-3, putative [Ricinus communis]
15 Hb_000230_330 0.0808401055 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
16 Hb_000390_060 0.0810136641 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
17 Hb_005532_050 0.0819251548 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_007192_080 0.0824163088 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
19 Hb_001680_010 0.085645248 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
20 Hb_001019_170 0.0857971042 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]

Gene co-expression network

sample Hb_002200_130 Hb_002200_130 Hb_000207_390 Hb_000207_390 Hb_002200_130--Hb_000207_390 Hb_003362_040 Hb_003362_040 Hb_002200_130--Hb_003362_040 Hb_001301_200 Hb_001301_200 Hb_002200_130--Hb_001301_200 Hb_000048_140 Hb_000048_140 Hb_002200_130--Hb_000048_140 Hb_028639_010 Hb_028639_010 Hb_002200_130--Hb_028639_010 Hb_001797_050 Hb_001797_050 Hb_002200_130--Hb_001797_050 Hb_007163_090 Hb_007163_090 Hb_000207_390--Hb_007163_090 Hb_000207_390--Hb_001797_050 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_000207_390--Hb_001301_200 Hb_000803_190 Hb_000803_190 Hb_000207_390--Hb_000803_190 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_000048_140--Hb_028639_010 Hb_000048_140--Hb_000034_050 Hb_000048_140--Hb_003362_040 Hb_007407_040 Hb_007407_040 Hb_000048_140--Hb_007407_040 Hb_000230_330 Hb_000230_330 Hb_000048_140--Hb_000230_330 Hb_009535_020 Hb_009535_020 Hb_028639_010--Hb_009535_020 Hb_003090_080 Hb_003090_080 Hb_028639_010--Hb_003090_080 Hb_000600_070 Hb_000600_070 Hb_028639_010--Hb_000600_070 Hb_000173_510 Hb_000173_510 Hb_028639_010--Hb_000173_510 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_001797_050--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.419 16.158 9.14931 15.6445 34.9848 43.4335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2859 13.6944 26.3955 15.1221 8.18348

CAGE analysis