Hb_002203_010

Information

Type -
Description -
Location Contig2203: 214-4733
Sequence    

Annotation

kegg
ID rcu:RCOM_1618460
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_010663524.1
description PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
swissprot
ID Q6PFD6
description Kinesin-like protein KIF18B OS=Mus musculus GN=Kif18b PE=2 SV=2
trembl
ID B9RE57
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1618460 PE=3 SV=1
Gene Ontology
ID GO:0015630
description kinesin-like protein kif18b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22688: 3353-3847 , PASA_asmbl_22689: 3848-4109 , PASA_asmbl_22690: 4239-5100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002203_010 0.0 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
2 Hb_000213_020 0.0685133431 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000359_100 0.0730528394 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001349_050 0.0841515107 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
5 Hb_004005_060 0.0848687001 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
6 Hb_002818_060 0.0910184005 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000878_080 0.0913310082 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
8 Hb_002894_060 0.0927197778 - - respiratory burst oxidase D [Manihot esculenta]
9 Hb_000830_010 0.0955894287 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002028_270 0.0957480154 - - Pectinesterase-1 precursor, putative [Ricinus communis]
11 Hb_005276_190 0.0962290469 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
12 Hb_002053_100 0.1022632644 - - actin binding protein, putative [Ricinus communis]
13 Hb_000538_290 0.1039803282 - - hypothetical protein RCOM_0303940 [Ricinus communis]
14 Hb_006198_100 0.1051499559 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_001348_100 0.1059263862 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
16 Hb_001623_250 0.1072395465 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
17 Hb_001007_020 0.1089343825 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
18 Hb_001971_040 0.1146102539 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
19 Hb_002836_110 0.1158758064 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
20 Hb_024714_090 0.1171803645 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_002203_010 Hb_002203_010 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_000359_100 Hb_000359_100 Hb_002203_010--Hb_000359_100 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_004005_060 Hb_004005_060 Hb_002203_010--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_000878_080 Hb_000878_080 Hb_002203_010--Hb_000878_080 Hb_000213_020--Hb_004005_060 Hb_001085_160 Hb_001085_160 Hb_000213_020--Hb_001085_160 Hb_000933_040 Hb_000933_040 Hb_000213_020--Hb_000933_040 Hb_000213_020--Hb_000878_080 Hb_024714_090 Hb_024714_090 Hb_000213_020--Hb_024714_090 Hb_002028_270 Hb_002028_270 Hb_000359_100--Hb_002028_270 Hb_000359_100--Hb_004005_060 Hb_000359_100--Hb_002818_060 Hb_001007_020 Hb_001007_020 Hb_000359_100--Hb_001007_020 Hb_001159_090 Hb_001159_090 Hb_000359_100--Hb_001159_090 Hb_002894_060 Hb_002894_060 Hb_001349_050--Hb_002894_060 Hb_001623_250 Hb_001623_250 Hb_001349_050--Hb_001623_250 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_004005_060--Hb_002028_270 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_004005_060--Hb_000878_080 Hb_002818_060--Hb_001623_250 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_000878_080--Hb_002894_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.284298 3.79893 3.14569 0 0.0102168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239922 0.0188774 0 0.210401 0.637249

CAGE analysis