Hb_002203_030

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig2203: 13884-19181
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G179300g
description hypothetical protein
nr
ID XP_012092933.1
description PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
swissprot
ID P49592
description Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
trembl
ID A0A0D2N3C6
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G064700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein dr1 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22694: 13792-19058 , PASA_asmbl_22695: 13792-29751 , PASA_asmbl_22696: 13798-29751 , PASA_asmbl_22697: 13927-19066 , PASA_asmbl_22698: 13985-29731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002203_030 0.0 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
2 Hb_000723_030 0.0629581456 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
3 Hb_000160_140 0.0677765085 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
4 Hb_004225_060 0.0840703413 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
5 Hb_000476_060 0.0850319506 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_000176_020 0.0860140864 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
7 Hb_000230_460 0.0862717288 - - Speckle-type POZ protein, putative [Ricinus communis]
8 Hb_003687_120 0.0870573533 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
9 Hb_000137_010 0.0892021435 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
10 Hb_026198_010 0.0900967305 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
11 Hb_001500_120 0.0924382863 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001635_110 0.0946834524 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
13 Hb_001140_090 0.0950175656 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000680_120 0.0950366705 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_010287_020 0.0956353964 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
16 Hb_000699_150 0.0959021118 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_005977_030 0.0971663012 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
18 Hb_004333_040 0.0989843829 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
19 Hb_001776_210 0.0990411658 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000000_230 0.0994646757 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002203_030 Hb_002203_030 Hb_000723_030 Hb_000723_030 Hb_002203_030--Hb_000723_030 Hb_000160_140 Hb_000160_140 Hb_002203_030--Hb_000160_140 Hb_004225_060 Hb_004225_060 Hb_002203_030--Hb_004225_060 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_000230_460 Hb_000230_460 Hb_002203_030--Hb_000230_460 Hb_000723_030--Hb_004225_060 Hb_000723_030--Hb_000160_140 Hb_001500_120 Hb_001500_120 Hb_000723_030--Hb_001500_120 Hb_003687_120 Hb_003687_120 Hb_000723_030--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_000723_030--Hb_029622_120 Hb_000160_140--Hb_004225_060 Hb_000160_140--Hb_000230_460 Hb_010287_020 Hb_010287_020 Hb_000160_140--Hb_010287_020 Hb_000137_010 Hb_000137_010 Hb_000160_140--Hb_000137_010 Hb_004225_060--Hb_001500_120 Hb_004225_060--Hb_003687_120 Hb_004225_060--Hb_029622_120 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_171900_090 Hb_171900_090 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000176_020--Hb_001025_090 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000789_320 Hb_000789_320 Hb_000176_020--Hb_000789_320 Hb_178968_060 Hb_178968_060 Hb_000230_460--Hb_178968_060 Hb_002435_100 Hb_002435_100 Hb_000230_460--Hb_002435_100 Hb_000230_460--Hb_000137_010 Hb_007254_020 Hb_007254_020 Hb_000230_460--Hb_007254_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3506 42.1585 53.1704 30.7057 10.3494 12.4663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8146 25.3623 19.3039 30.1067 33.0188

CAGE analysis