Hb_002205_010

Information

Type -
Description -
Location Contig2205: 13813-14205
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08120g
description hypothetical protein
nr
ID KDP21666.1
description hypothetical protein JCGZ_03337 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03337 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22701: 13770-14402
cDNA
(Sanger)
(ID:Location)		 006_M07.ab1: 13770-14388 , 021_A02.ab1: 13774-14402 , 042_I17.ab1: 13770-14393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_010 0.0 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
2 Hb_002110_240 0.1163647545 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_020400_040 0.1221242064 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
4 Hb_000179_240 0.1445322137 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
5 Hb_000256_130 0.1657254687 - - hypothetical protein 21 [Hevea brasiliensis]
6 Hb_001472_130 0.1736365779 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
7 Hb_001123_200 0.1750974669 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002639_100 0.178099838 - - dehydrin [Hevea brasiliensis]
9 Hb_008173_030 0.1785750191 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
10 Hb_000634_070 0.1830023224 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
11 Hb_171900_020 0.1842683021 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
12 Hb_002572_050 0.1861201827 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
13 Hb_005276_170 0.1862308106 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
14 Hb_012760_010 0.1885325797 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
15 Hb_006909_060 0.1923274441 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
16 Hb_000503_010 0.1933985508 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
17 Hb_001235_170 0.1942033741 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
18 Hb_000086_340 0.1951030607 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
19 Hb_002053_130 0.196266446 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
20 Hb_005663_070 0.1969452453 - - dehydrin protein [Manihot esculenta]

Gene co-expression network

sample Hb_002205_010 Hb_002205_010 Hb_002110_240 Hb_002110_240 Hb_002205_010--Hb_002110_240 Hb_020400_040 Hb_020400_040 Hb_002205_010--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_000256_130 Hb_000256_130 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_002110_240--Hb_000256_130 Hb_002110_240--Hb_020400_040 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_006096_010 Hb_006096_010 Hb_020400_040--Hb_006096_010 Hb_012760_010 Hb_012760_010 Hb_020400_040--Hb_012760_010 Hb_156850_080 Hb_156850_080 Hb_020400_040--Hb_156850_080 Hb_020400_040--Hb_001123_200 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_000023_250 Hb_000023_250 Hb_000256_130--Hb_000023_250 Hb_000364_040 Hb_000364_040 Hb_000256_130--Hb_000364_040 Hb_000976_280 Hb_000976_280 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_005663_070 Hb_005663_070 Hb_000256_130--Hb_005663_070 Hb_000809_080 Hb_000809_080 Hb_001472_130--Hb_000809_080 Hb_000038_040 Hb_000038_040 Hb_001472_130--Hb_000038_040 Hb_000805_230 Hb_000805_230 Hb_001472_130--Hb_000805_230 Hb_006935_010 Hb_006935_010 Hb_001472_130--Hb_006935_010 Hb_000221_060 Hb_000221_060 Hb_001472_130--Hb_000221_060 Hb_000417_420 Hb_000417_420 Hb_001472_130--Hb_000417_420 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_001123_200--Hb_000179_240 Hb_001123_200--Hb_000976_280 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.8131 633.052 165.663 147.281 51.624 36.1268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.3664 229.672 79.9119 81.0699 5.94186

CAGE analysis