Hb_002205_040

Information

Type -
Description -
Location Contig2205: 50164-55084
Sequence    

Annotation

kegg
ID rcu:RCOM_0689620
description nucleic acid binding protein, putative
nr
ID XP_002520853.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4D4
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0689620 PE=4 SV=1
Gene Ontology
ID GO:0016779
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22704: 50479-51404 , PASA_asmbl_22705: 50415-50815 , PASA_asmbl_22706: 51458-52267 , PASA_asmbl_22707: 52502-52835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_040 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_023386_040 0.0701363871 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
3 Hb_002890_020 0.0720376739 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
4 Hb_001014_050 0.0760207926 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
5 Hb_000926_190 0.0762539529 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_000207_310 0.0789227819 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
7 Hb_022693_120 0.0795149976 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
8 Hb_001369_220 0.0807084104 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
9 Hb_001789_240 0.0812981368 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
10 Hb_000116_180 0.0864683578 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
11 Hb_000373_280 0.0868383754 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
12 Hb_005276_210 0.0868510281 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
13 Hb_002477_280 0.0871101566 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
14 Hb_005914_060 0.0873347919 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
15 Hb_012670_140 0.0876551406 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
16 Hb_154745_010 0.0884287762 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_007054_060 0.0889485205 - - -
18 Hb_000827_070 0.0891900466 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_000345_170 0.0892475632 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
20 Hb_000768_110 0.0894386862 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_040 Hb_002205_040 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_002890_020--Hb_000207_310 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_000029_130 Hb_000029_130 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_005245_130 Hb_005245_130 Hb_001014_050--Hb_005245_130 Hb_003849_060 Hb_003849_060 Hb_001014_050--Hb_003849_060 Hb_000794_050 Hb_000794_050 Hb_001014_050--Hb_000794_050 Hb_011942_080 Hb_011942_080 Hb_001014_050--Hb_011942_080 Hb_000462_140 Hb_000462_140 Hb_001014_050--Hb_000462_140 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_022693_120--Hb_000207_310 Hb_022693_120--Hb_023386_040 Hb_000768_110 Hb_000768_110 Hb_022693_120--Hb_000768_110 Hb_007026_030 Hb_007026_030 Hb_022693_120--Hb_007026_030 Hb_009222_010 Hb_009222_010 Hb_022693_120--Hb_009222_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59866 4.26362 2.44107 1.76374 6.97884 8.14726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45452 6.28343 3.30418 5.08012 3.41369

CAGE analysis