Hb_002205_050

Information

Type -
Description -
Location Contig2205: 66135-67883
Sequence    

Annotation

kegg
ID rcu:RCOM_1105030
description nucleic acid binding protein, putative
nr
ID KDP21664.1
description hypothetical protein JCGZ_03335 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03335 PE=4 SV=1
Gene Ontology
ID GO:0016779
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22708: 66238-67322 , PASA_asmbl_22709: 67402-73295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_050 0.0 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
2 Hb_002849_040 0.14021596 - - caax prenyl protease ste24, putative [Ricinus communis]
3 Hb_009543_020 0.1629483278 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
4 Hb_004060_030 0.1655505584 - - PREDICTED: primase homolog protein [Jatropha curcas]
5 Hb_032458_010 0.1665189405 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
6 Hb_000696_350 0.1700258759 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
7 Hb_006663_070 0.1733162627 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
8 Hb_022092_090 0.1736433732 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
9 Hb_000062_420 0.1758875777 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003663_060 0.1772541172 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
11 Hb_005608_030 0.1787508207 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
12 Hb_002141_040 0.1803098714 - - -
13 Hb_012286_050 0.1803336634 - - PREDICTED: syntaxin-61 [Jatropha curcas]
14 Hb_006455_110 0.1809616399 - - bromodomain-containing protein, putative [Ricinus communis]
15 Hb_000162_100 0.1824169743 - - PREDICTED: uncharacterized protein LOC105638832 [Jatropha curcas]
16 Hb_000679_150 0.1845218308 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
17 Hb_007012_020 0.1845667172 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
18 Hb_002601_130 0.1847908146 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
19 Hb_000364_150 0.1877247489 - - -
20 Hb_000656_100 0.1881211982 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_050 Hb_002205_050 Hb_002849_040 Hb_002849_040 Hb_002205_050--Hb_002849_040 Hb_009543_020 Hb_009543_020 Hb_002205_050--Hb_009543_020 Hb_004060_030 Hb_004060_030 Hb_002205_050--Hb_004060_030 Hb_032458_010 Hb_032458_010 Hb_002205_050--Hb_032458_010 Hb_000696_350 Hb_000696_350 Hb_002205_050--Hb_000696_350 Hb_006663_070 Hb_006663_070 Hb_002205_050--Hb_006663_070 Hb_002849_040--Hb_004060_030 Hb_022092_090 Hb_022092_090 Hb_002849_040--Hb_022092_090 Hb_006502_080 Hb_006502_080 Hb_002849_040--Hb_006502_080 Hb_005656_050 Hb_005656_050 Hb_002849_040--Hb_005656_050 Hb_000413_160 Hb_000413_160 Hb_002849_040--Hb_000413_160 Hb_002903_080 Hb_002903_080 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_000342_080 Hb_000342_080 Hb_009543_020--Hb_000342_080 Hb_026745_020 Hb_026745_020 Hb_004060_030--Hb_026745_020 Hb_005085_030 Hb_005085_030 Hb_004060_030--Hb_005085_030 Hb_028420_020 Hb_028420_020 Hb_004060_030--Hb_028420_020 Hb_002174_050 Hb_002174_050 Hb_004060_030--Hb_002174_050 Hb_005862_010 Hb_005862_010 Hb_004060_030--Hb_005862_010 Hb_000329_560 Hb_000329_560 Hb_004060_030--Hb_000329_560 Hb_004619_050 Hb_004619_050 Hb_032458_010--Hb_004619_050 Hb_005608_030 Hb_005608_030 Hb_032458_010--Hb_005608_030 Hb_000429_120 Hb_000429_120 Hb_032458_010--Hb_000429_120 Hb_001866_110 Hb_001866_110 Hb_032458_010--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_032458_010--Hb_000889_020 Hb_009117_030 Hb_009117_030 Hb_032458_010--Hb_009117_030 Hb_008511_050 Hb_008511_050 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_000696_350--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_000696_350--Hb_006455_090 Hb_025814_010 Hb_025814_010 Hb_000696_350--Hb_025814_010 Hb_006663_070--Hb_000679_150 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_006663_070--Hb_004619_050 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22308 0.903414 0.445679 1.07738 1.60187 7.62221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09089 2.31457 1.48746 0.917012 2.30265

CAGE analysis