Hb_002205_070

Information

Type -
Description -
Location Contig2205: 73311-75968
Sequence    

Annotation

kegg
ID rcu:RCOM_1105140
description N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative (EC:2.1.1.32)
nr
ID XP_012091158.1
description PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
swissprot
ID B6YUU9
description tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus onnurineus (strain NA1) GN=trm1 PE=3 SV=1
trembl
ID A0A067JFV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03334 PE=4 SV=1
Gene Ontology
ID GO:0009507
description trna (guanine -n )-dimethyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22710: 74557-75862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_070 0.0 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
2 Hb_118707_030 0.0584964061 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
3 Hb_000107_620 0.0623806221 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
4 Hb_009838_080 0.0679214009 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_000236_070 0.0685845297 - - conserved hypothetical protein [Ricinus communis]
6 Hb_017904_010 0.0737202386 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
7 Hb_006541_030 0.0790720136 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
8 Hb_024714_010 0.0797419577 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
9 Hb_002214_040 0.0803333302 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_022693_060 0.0845610434 - - -
11 Hb_002942_190 0.0861462048 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_000243_030 0.0882986228 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_004619_020 0.0885091379 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002963_020 0.0888778264 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001246_060 0.0897514028 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000959_260 0.0902874951 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
17 Hb_007380_070 0.0903740963 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_001959_070 0.0918712899 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
19 Hb_012725_050 0.0919213959 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
20 Hb_002044_080 0.0925145276 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_070 Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_002214_040 Hb_002214_040 Hb_118707_030--Hb_002214_040 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_118707_030--Hb_000107_620 Hb_000107_620--Hb_009838_080 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_009838_080--Hb_002214_040 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_011316_040 Hb_011316_040 Hb_000236_070--Hb_011316_040 Hb_024185_020 Hb_024185_020 Hb_000236_070--Hb_024185_020 Hb_000236_070--Hb_000107_620 Hb_000648_110 Hb_000648_110 Hb_000236_070--Hb_000648_110 Hb_000236_070--Hb_009838_080 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_017904_010--Hb_011571_010 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95263 1.06781 1.21937 0.980762 2.27465 3.67142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68572 4.04158 2.95241 1.33574 2.3121

CAGE analysis