Hb_002205_080

Information

Type -
Description -
Location Contig2205: 79243-81157
Sequence    

Annotation

kegg
ID rcu:RCOM_0689630
description 40S ribosomal protein S26, putative
nr
ID XP_002520854.1
description 40S ribosomal protein S26, putative [Ricinus communis]
swissprot
ID Q9LYK9
description 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1
trembl
ID B9S4D5
description 40S ribosomal protein S26, putative OS=Ricinus communis GN=RCOM_0689630 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s26-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22711: 79302-81162 , PASA_asmbl_22714: 82080-85596
cDNA
(Sanger)
(ID:Location)		 019_B21.ab1: 79562-81162 , 040_K08.ab1: 79580-81110 , 041_K22.ab1: 79606-81110 , 050_J08.ab1: 79503-81113

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_080 0.0 - - 40S ribosomal protein S26, putative [Ricinus communis]
2 Hb_001257_080 0.0569117703 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000270_270 0.0746971996 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
4 Hb_001379_060 0.0765610673 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
5 Hb_007101_150 0.0788278177 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
6 Hb_001828_090 0.0814254601 - - prohibitin, putative [Ricinus communis]
7 Hb_003018_200 0.0849890502 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
8 Hb_008878_030 0.0853360384 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
9 Hb_000454_050 0.0868327257 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
10 Hb_007741_050 0.0884890096 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_000134_330 0.0895162397 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
12 Hb_002928_130 0.0916255792 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
13 Hb_027472_180 0.0919702888 - - hypothetical protein L484_016229 [Morus notabilis]
14 Hb_000703_140 0.0921378832 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
15 Hb_000928_240 0.0935676844 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
16 Hb_002296_060 0.0935687956 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
17 Hb_000331_080 0.0937916102 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
18 Hb_001246_090 0.09399906 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
19 Hb_000056_340 0.0947411475 - - 60S ribosomal protein L34A [Hevea brasiliensis]
20 Hb_000684_090 0.0960501367 transcription factor TF Family: S1Fa-like -

Gene co-expression network

sample Hb_002205_080 Hb_002205_080 Hb_001257_080 Hb_001257_080 Hb_002205_080--Hb_001257_080 Hb_000270_270 Hb_000270_270 Hb_002205_080--Hb_000270_270 Hb_001379_060 Hb_001379_060 Hb_002205_080--Hb_001379_060 Hb_007101_150 Hb_007101_150 Hb_002205_080--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_002205_080--Hb_001828_090 Hb_003018_200 Hb_003018_200 Hb_002205_080--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_153112_020 Hb_153112_020 Hb_000270_270--Hb_153112_020 Hb_000684_090 Hb_000684_090 Hb_000270_270--Hb_000684_090 Hb_002874_190 Hb_002874_190 Hb_000270_270--Hb_002874_190 Hb_004931_090 Hb_004931_090 Hb_000270_270--Hb_004931_090 Hb_000331_080 Hb_000331_080 Hb_000270_270--Hb_000331_080 Hb_001379_060--Hb_001828_090 Hb_001379_060--Hb_007101_150 Hb_001512_070 Hb_001512_070 Hb_001379_060--Hb_001512_070 Hb_001379_060--Hb_000684_090 Hb_001379_060--Hb_000270_270 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_007101_150--Hb_001512_070 Hb_007101_150--Hb_003018_200 Hb_007101_150--Hb_007741_050 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001828_090--Hb_001512_070 Hb_001828_090--Hb_000684_090 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_008453_090 Hb_008453_090 Hb_003018_200--Hb_008453_090 Hb_003018_200--Hb_000056_340 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.529 73.1844 141.512 77.9557 316.858 202.401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
384.864 480.039 304.777 158.603 47.4099

CAGE analysis