Hb_002205_110

Information

Type -
Description -
Location Contig2205: 94296-98684
Sequence    

Annotation

kegg
ID rcu:RCOM_0689680
description hypothetical protein
nr
ID XP_002520859.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GYH6
description Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1
trembl
ID B9S4E0
description Reticulon-like protein OS=Ricinus communis GN=RCOM_0689680 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22717: 97138-97598 , PASA_asmbl_22718: 94622-98679 , PASA_asmbl_22720: 96510-97115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000028_370 0.0392908562 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
3 Hb_001205_240 0.0562377868 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
4 Hb_002232_410 0.0570332741 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
5 Hb_001408_040 0.0600338629 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
6 Hb_010997_080 0.062452921 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
7 Hb_000441_140 0.0648666216 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
8 Hb_000732_010 0.0649724699 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
9 Hb_008725_230 0.065625963 - - PREDICTED: CTP synthase [Jatropha curcas]
10 Hb_003761_010 0.0667102035 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_000220_010 0.068178816 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
12 Hb_001359_050 0.0682126894 - - conserved hypothetical protein [Ricinus communis]
13 Hb_024958_010 0.0703942206 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
14 Hb_000357_110 0.071021691 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
15 Hb_013738_020 0.0712026079 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000030_190 0.0713305359 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
17 Hb_028285_010 0.0717823471 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
18 Hb_028962_020 0.072208508 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
19 Hb_000603_150 0.0730964838 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
20 Hb_000649_110 0.0732928392 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002205_110 Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_000028_370--Hb_001205_240 Hb_008725_230 Hb_008725_230 Hb_000028_370--Hb_008725_230 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_001205_240--Hb_003761_010 Hb_001205_240--Hb_008725_230 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_010997_080--Hb_000441_140 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_002026_210 Hb_002026_210 Hb_000441_140--Hb_002026_210 Hb_000441_140--Hb_001205_240 Hb_000441_140--Hb_000028_370 Hb_000030_190 Hb_000030_190 Hb_000441_140--Hb_000030_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2508 13.1596 9.76317 13.2609 8.85528 12.5874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6866 13.2939 10.0359 9.61561 7.14207

CAGE analysis