Hb_002205_160

Information

Type -
Description -
Location Contig2205: 127569-129295
Sequence    

Annotation

kegg
ID rcu:RCOM_0689790
description Chalcone--flavonone isomerase, putative (EC:5.5.1.6)
nr
ID AIC73814.1
description chalcone isomerase [Hibiscus cannabinus]
swissprot
ID Q8VZW3
description Probable chalcone--flavonone isomerase 3 OS=Arabidopsis thaliana GN=CHI3 PE=1 SV=1
trembl
ID A0A060L474
description Chalcone-flavonone isomerase family protein OS=Hibiscus cannabinus GN=CHI PE=2 SV=1
Gene Ontology
ID GO:0045430
description probable chalcone--flavonone isomerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_160 0.0 - - chalcone isomerase [Hibiscus cannabinus]
2 Hb_169753_010 0.0886546911 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
3 Hb_007441_290 0.0960596063 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
4 Hb_000035_150 0.1062055824 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
5 Hb_003992_130 0.1063331515 - - unnamed protein product [Vitis vinifera]
6 Hb_007951_020 0.1114234406 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
7 Hb_022406_010 0.1128073075 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_002918_220 0.1163550848 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
9 Hb_010267_020 0.1175449196 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
10 Hb_004650_040 0.1180373662 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
11 Hb_027337_010 0.1222543847 - - Potassium transporter, putative [Ricinus communis]
12 Hb_000664_080 0.1231952269 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
13 Hb_003626_020 0.1238194696 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
14 Hb_005695_070 0.123914686 - - Cysteine-rich RLK 29 [Theobroma cacao]
15 Hb_002170_060 0.1258742892 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
16 Hb_002995_010 0.1307519744 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
17 Hb_006519_020 0.1310585239 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000200_270 0.1321319192 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
19 Hb_027905_040 0.1335790124 transcription factor TF Family: E2F-DP PREDICTED: E2F transcription factor-like E2FF [Jatropha curcas]
20 Hb_008643_220 0.1366742589 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_160 Hb_002205_160 Hb_169753_010 Hb_169753_010 Hb_002205_160--Hb_169753_010 Hb_007441_290 Hb_007441_290 Hb_002205_160--Hb_007441_290 Hb_000035_150 Hb_000035_150 Hb_002205_160--Hb_000035_150 Hb_003992_130 Hb_003992_130 Hb_002205_160--Hb_003992_130 Hb_007951_020 Hb_007951_020 Hb_002205_160--Hb_007951_020 Hb_022406_010 Hb_022406_010 Hb_002205_160--Hb_022406_010 Hb_010267_020 Hb_010267_020 Hb_169753_010--Hb_010267_020 Hb_169753_010--Hb_007441_290 Hb_006519_020 Hb_006519_020 Hb_169753_010--Hb_006519_020 Hb_004007_080 Hb_004007_080 Hb_169753_010--Hb_004007_080 Hb_004422_030 Hb_004422_030 Hb_169753_010--Hb_004422_030 Hb_004650_040 Hb_004650_040 Hb_007441_290--Hb_004650_040 Hb_012753_150 Hb_012753_150 Hb_007441_290--Hb_012753_150 Hb_007441_290--Hb_010267_020 Hb_007441_290--Hb_006519_020 Hb_007643_060 Hb_007643_060 Hb_000035_150--Hb_007643_060 Hb_000035_150--Hb_003992_130 Hb_000035_150--Hb_007951_020 Hb_006615_220 Hb_006615_220 Hb_000035_150--Hb_006615_220 Hb_003626_020 Hb_003626_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003992_130--Hb_003626_020 Hb_027337_010 Hb_027337_010 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_007951_020--Hb_007643_060 Hb_007951_020--Hb_003626_020 Hb_012691_010 Hb_012691_010 Hb_007951_020--Hb_012691_010 Hb_005743_010 Hb_005743_010 Hb_007951_020--Hb_005743_010 Hb_000343_010 Hb_000343_010 Hb_007951_020--Hb_000343_010 Hb_149985_030 Hb_149985_030 Hb_022406_010--Hb_149985_030 Hb_001606_040 Hb_001606_040 Hb_022406_010--Hb_001606_040 Hb_022406_010--Hb_006519_020 Hb_012084_010 Hb_012084_010 Hb_022406_010--Hb_012084_010 Hb_022406_010--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_022406_010--Hb_005695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.79732 17.5749 3.52123 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627024 0 0 1.71316 1.49261

CAGE analysis