Hb_002205_170

Information

Type -
Description -
Location Contig2205: 131977-132663
Sequence    

Annotation

kegg
ID rcu:RCOM_0690120
description hypothetical protein
nr
ID XP_012091143.1
description PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_A02.ab1: 131946-132587

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_170 0.0 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
2 Hb_001195_070 0.1821178227 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_015941_050 0.1841604928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000175_260 0.1877198517 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
5 Hb_001584_240 0.1881028271 - - ADP-ribosylation factor [Gossypium barbadense]
6 Hb_000007_200 0.195160462 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
7 Hb_000742_030 0.1987882503 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
8 Hb_003103_010 0.2046306885 - - conserved hypothetical protein [Ricinus communis]
9 Hb_079483_020 0.2072359369 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
10 Hb_003911_030 0.2111839701 - - glutamate dehydrogenase, putative [Ricinus communis]
11 Hb_001307_110 0.2126644418 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
12 Hb_000946_100 0.2138036821 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
13 Hb_000796_020 0.2160309347 - - ADP-ribosylation factor [Phaseolus vulgaris]
14 Hb_002154_110 0.2176538853 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
15 Hb_001671_030 0.2187357385 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_008206_100 0.2189447323 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
17 Hb_000345_080 0.2220409791 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
18 Hb_000407_070 0.224210869 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
19 Hb_002639_020 0.2249284463 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
20 Hb_001322_070 0.2254226208 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002205_170 Hb_002205_170 Hb_001195_070 Hb_001195_070 Hb_002205_170--Hb_001195_070 Hb_015941_050 Hb_015941_050 Hb_002205_170--Hb_015941_050 Hb_000175_260 Hb_000175_260 Hb_002205_170--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_002205_170--Hb_001584_240 Hb_000007_200 Hb_000007_200 Hb_002205_170--Hb_000007_200 Hb_000742_030 Hb_000742_030 Hb_002205_170--Hb_000742_030 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_001195_070--Hb_000175_260 Hb_001195_070--Hb_001584_240 Hb_003103_010 Hb_003103_010 Hb_001195_070--Hb_003103_010 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_005144_010 Hb_005144_010 Hb_015941_050--Hb_005144_010 Hb_001322_070 Hb_001322_070 Hb_015941_050--Hb_001322_070 Hb_015941_050--Hb_001584_240 Hb_008206_100 Hb_008206_100 Hb_015941_050--Hb_008206_100 Hb_000483_400 Hb_000483_400 Hb_015941_050--Hb_000483_400 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000254_140 Hb_000254_140 Hb_000175_260--Hb_000254_140 Hb_000345_080 Hb_000345_080 Hb_000175_260--Hb_000345_080 Hb_000294_050 Hb_000294_050 Hb_000175_260--Hb_000294_050 Hb_000175_260--Hb_000742_030 Hb_002960_130 Hb_002960_130 Hb_001584_240--Hb_002960_130 Hb_001584_240--Hb_000671_130 Hb_048476_060 Hb_048476_060 Hb_001584_240--Hb_048476_060 Hb_083380_020 Hb_083380_020 Hb_001584_240--Hb_083380_020 Hb_001208_040 Hb_001208_040 Hb_001584_240--Hb_001208_040 Hb_012807_130 Hb_012807_130 Hb_000007_200--Hb_012807_130 Hb_004007_110 Hb_004007_110 Hb_000007_200--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_000007_200--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_000007_200--Hb_000012_110 Hb_000007_200--Hb_029920_060 Hb_000139_470 Hb_000139_470 Hb_000007_200--Hb_000139_470 Hb_000742_030--Hb_000345_080 Hb_008695_220 Hb_008695_220 Hb_000742_030--Hb_008695_220 Hb_000742_030--Hb_001195_070 Hb_000742_030--Hb_000294_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8891 48.2953 38.2434 282.718 6.77524 11.4426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.3379 166.615 56.3785 9.17225 110.4

CAGE analysis