Hb_002205_180

Information

Type -
Description -
Location Contig2205: 134477-138110
Sequence    

Annotation

kegg
ID rcu:RCOM_0690110
description hypothetical protein
nr
ID XP_012091142.1
description PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22729: 136666-138128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_180 0.0 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
2 Hb_004102_090 0.0519986321 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
3 Hb_000189_350 0.0828764898 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
4 Hb_000441_210 0.0947488987 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
5 Hb_010705_040 0.0993492179 - - PREDICTED: kinesin-4 [Jatropha curcas]
6 Hb_006520_030 0.0994596793 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
7 Hb_033152_060 0.102123978 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
8 Hb_000028_530 0.105236554 - - Protein regulator of cytokinesis, putative [Ricinus communis]
9 Hb_000316_070 0.1055388596 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
10 Hb_000334_120 0.1070007071 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
11 Hb_004635_020 0.1074483062 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
12 Hb_001864_040 0.1098495099 - - PREDICTED: kinesin-1 [Jatropha curcas]
13 Hb_004963_020 0.1114237426 - - PREDICTED: patellin-4 [Populus euphratica]
14 Hb_080952_060 0.1133877551 - - PREDICTED: patellin-4 [Populus euphratica]
15 Hb_101133_050 0.1134035811 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
16 Hb_011849_010 0.1173731345 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
17 Hb_000034_150 0.1177085993 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
18 Hb_000936_030 0.1185321185 - - hypothetical protein RCOM_0615680 [Ricinus communis]
19 Hb_000069_510 0.1199001814 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
20 Hb_014497_070 0.1200300324 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_180 Hb_002205_180 Hb_004102_090 Hb_004102_090 Hb_002205_180--Hb_004102_090 Hb_000189_350 Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_000441_210 Hb_000441_210 Hb_002205_180--Hb_000441_210 Hb_010705_040 Hb_010705_040 Hb_002205_180--Hb_010705_040 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_004963_020 Hb_004963_020 Hb_004102_090--Hb_004963_020 Hb_004102_090--Hb_000441_210 Hb_000316_070 Hb_000316_070 Hb_004102_090--Hb_000316_070 Hb_004102_090--Hb_006520_030 Hb_004102_090--Hb_000189_350 Hb_000189_350--Hb_033152_060 Hb_000189_350--Hb_000316_070 Hb_027905_040 Hb_027905_040 Hb_000189_350--Hb_027905_040 Hb_011849_010 Hb_011849_010 Hb_000189_350--Hb_011849_010 Hb_000028_530 Hb_000028_530 Hb_000189_350--Hb_000028_530 Hb_000441_210--Hb_004963_020 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_010705_040--Hb_004963_020 Hb_010705_040--Hb_004102_090 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_006520_030--Hb_011849_010 Hb_001998_180 Hb_001998_180 Hb_006520_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_006520_030--Hb_003776_050 Hb_080952_060 Hb_080952_060 Hb_006520_030--Hb_080952_060 Hb_001969_120 Hb_001969_120 Hb_006520_030--Hb_001969_120 Hb_003777_260 Hb_003777_260 Hb_006520_030--Hb_003777_260 Hb_001864_040 Hb_001864_040 Hb_033152_060--Hb_001864_040 Hb_033152_060--Hb_000316_070 Hb_033152_060--Hb_027905_040 Hb_004635_020 Hb_004635_020 Hb_033152_060--Hb_004635_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0815745 0.173277 5.10209 1.99103 0.0316426 0.0417124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025624 0.161287 0 0.40151 0.297182

CAGE analysis