Hb_002205_210

Information

Type -
Description -
Location Contig2205: 147874-154417
Sequence    

Annotation

kegg
ID rcu:RCOM_0690060
description methionyl-tRNA synthetase, putative
nr
ID XP_012091137.1
description PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9SVN5
description Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1
trembl
ID A0A067JFS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03314 PE=4 SV=1
Gene Ontology
ID GO:0005829
description aminoacyl trna synthase complex-interacting multifunctional protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22732: 147940-154389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_210 0.0 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
2 Hb_001040_100 0.0782101846 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
3 Hb_168978_030 0.0797321678 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
4 Hb_063716_100 0.0816392332 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
5 Hb_000640_170 0.0828001317 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
6 Hb_001599_040 0.0899013259 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
7 Hb_000302_310 0.0904365499 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
8 Hb_000521_120 0.09169685 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_007017_090 0.0929512207 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
10 Hb_007390_010 0.094371285 - - catalytic, putative [Ricinus communis]
11 Hb_000126_010 0.0949833808 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
12 Hb_003438_050 0.0950781529 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
13 Hb_029879_010 0.095225629 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
14 Hb_000120_920 0.096679877 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_002303_070 0.0974888399 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
16 Hb_000035_470 0.0974977593 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_002110_230 0.097697719 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_000139_290 0.0978307547 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
19 Hb_054745_010 0.100243945 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003226_140 0.1003059395 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_002205_210 Hb_002205_210 Hb_001040_100 Hb_001040_100 Hb_002205_210--Hb_001040_100 Hb_168978_030 Hb_168978_030 Hb_002205_210--Hb_168978_030 Hb_063716_100 Hb_063716_100 Hb_002205_210--Hb_063716_100 Hb_000640_170 Hb_000640_170 Hb_002205_210--Hb_000640_170 Hb_001599_040 Hb_001599_040 Hb_002205_210--Hb_001599_040 Hb_000302_310 Hb_000302_310 Hb_002205_210--Hb_000302_310 Hb_000035_470 Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_168978_030--Hb_000640_170 Hb_168978_030--Hb_000035_470 Hb_000617_180 Hb_000617_180 Hb_168978_030--Hb_000617_180 Hb_105328_020 Hb_105328_020 Hb_168978_030--Hb_105328_020 Hb_002044_150 Hb_002044_150 Hb_168978_030--Hb_002044_150 Hb_000156_010 Hb_000156_010 Hb_168978_030--Hb_000156_010 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_063716_100--Hb_168978_030 Hb_063716_100--Hb_000617_180 Hb_000640_170--Hb_000035_470 Hb_000640_170--Hb_001599_040 Hb_009898_050 Hb_009898_050 Hb_000640_170--Hb_009898_050 Hb_000640_170--Hb_000156_010 Hb_026198_070 Hb_026198_070 Hb_000640_170--Hb_026198_070 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000302_310--Hb_000035_470 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5752 9.34224 21.881 18.5633 17.1715 35.4677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4544 22.0934 10.5879 26.925 18.532

CAGE analysis