Hb_002205_220

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2205: 156659-157470
Sequence    

Annotation

kegg
ID rcu:RCOM_0689950
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_002520876.1
description two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
swissprot
ID Q9FPR6
description Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1
trembl
ID B9S4F7
description Two-component system sensor histidine kinase/response regulator, putative OS=Ricinus communis GN=RCOM_0689950 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22733: 156625-157657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_220 0.0 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
2 Hb_000375_200 0.0720737381 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_028995_020 0.0756622733 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
4 Hb_000675_130 0.0784169929 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
5 Hb_008226_050 0.0788652885 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
6 Hb_002110_070 0.083127231 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
7 Hb_000175_110 0.084984762 - - hypothetical protein JCGZ_06125 [Jatropha curcas]
8 Hb_000193_170 0.0853844391 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
9 Hb_006332_030 0.0862927667 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_000130_400 0.0870710243 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
11 Hb_000732_090 0.088526829 - - cyclin d, putative [Ricinus communis]
12 Hb_003464_040 0.0927829017 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_011859_010 0.0929591589 - - hypothetical protein VITISV_027923 [Vitis vinifera]
14 Hb_000187_020 0.0949962904 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
15 Hb_001564_100 0.0960813006 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_012368_040 0.0979278762 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001257_070 0.1002971908 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
18 Hb_001699_090 0.1021010253 - - conserved hypothetical protein [Ricinus communis]
19 Hb_059832_010 0.1023661707 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_000084_230 0.1062061668 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]

Gene co-expression network

sample Hb_002205_220 Hb_002205_220 Hb_000375_200 Hb_000375_200 Hb_002205_220--Hb_000375_200 Hb_028995_020 Hb_028995_020 Hb_002205_220--Hb_028995_020 Hb_000675_130 Hb_000675_130 Hb_002205_220--Hb_000675_130 Hb_008226_050 Hb_008226_050 Hb_002205_220--Hb_008226_050 Hb_002110_070 Hb_002110_070 Hb_002205_220--Hb_002110_070 Hb_000175_110 Hb_000175_110 Hb_002205_220--Hb_000175_110 Hb_000193_170 Hb_000193_170 Hb_000375_200--Hb_000193_170 Hb_018663_010 Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_000130_400 Hb_000130_400 Hb_000375_200--Hb_000130_400 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_000187_020 Hb_000187_020 Hb_000375_200--Hb_000187_020 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040 Hb_006332_030 Hb_006332_030 Hb_028995_020--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_028995_020--Hb_011218_020 Hb_028995_020--Hb_000175_110 Hb_000563_110 Hb_000563_110 Hb_028995_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_028995_020--Hb_001652_090 Hb_028995_020--Hb_012368_040 Hb_000394_120 Hb_000394_120 Hb_000675_130--Hb_000394_120 Hb_003641_040 Hb_003641_040 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_008226_050 Hb_001123_180 Hb_001123_180 Hb_000675_130--Hb_001123_180 Hb_000675_130--Hb_000193_170 Hb_008226_050--Hb_003641_040 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_008226_050--Hb_000130_400 Hb_001699_090 Hb_001699_090 Hb_002110_070--Hb_001699_090 Hb_008406_150 Hb_008406_150 Hb_002110_070--Hb_008406_150 Hb_002110_070--Hb_000394_120 Hb_002110_070--Hb_000675_130 Hb_002110_070--Hb_028995_020 Hb_000175_110--Hb_000563_110 Hb_001677_070 Hb_001677_070 Hb_000175_110--Hb_001677_070 Hb_000175_110--Hb_011218_020 Hb_000175_110--Hb_012368_040 Hb_000175_110--Hb_001652_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.16996 0.853371 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0481757 0.212801

CAGE analysis