Hb_002205_250

Information

Type -
Description -
Location Contig2205: 169001-182391
Sequence    

Annotation

kegg
ID pop:POPTR_0013s09440g
description POPTRDRAFT_823805; HEAT repeat-containing family protein
nr
ID XP_012091130.1
description PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
swissprot
ID Q55GS2
description Probable inactive serine/threonine-protein kinase scy1 OS=Dictyostelium discoideum GN=scy1 PE=3 SV=1
trembl
ID A0A067JQ47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03310 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive serine threonine-protein kinase scy1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22736: 168687-171804 , PASA_asmbl_22738: 173400-182276 , PASA_asmbl_22739: 173778-173992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_250 0.0 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
2 Hb_105105_010 0.0404822665 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
3 Hb_003835_070 0.0471879431 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
4 Hb_000614_210 0.0473248891 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
5 Hb_001814_030 0.0491245134 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_001716_020 0.0520174098 - - hydrolase, putative [Ricinus communis]
7 Hb_000243_210 0.0525886065 - - protein with unknown function [Ricinus communis]
8 Hb_000866_460 0.0550337989 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
9 Hb_001195_530 0.0566639281 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002732_040 0.0573498556 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
11 Hb_007747_040 0.0581713224 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
12 Hb_020378_030 0.0606233794 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
13 Hb_004586_220 0.0612450173 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
14 Hb_001408_140 0.0612868501 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
15 Hb_000174_060 0.061327576 - - zinc finger family protein [Populus trichocarpa]
16 Hb_000011_100 0.0614915566 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
17 Hb_012194_030 0.0618543925 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
18 Hb_159558_010 0.0623479339 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
19 Hb_000028_130 0.0628302264 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
20 Hb_031042_050 0.0628862847 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002205_250 Hb_002205_250 Hb_105105_010 Hb_105105_010 Hb_002205_250--Hb_105105_010 Hb_003835_070 Hb_003835_070 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_105105_010--Hb_001716_020 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_000614_210 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_000614_210--Hb_105105_010 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.33869 10.8609 8.54977 8.28181 8.31995 8.57418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6816 5.95674 7.85441 8.69623 8.78653

CAGE analysis