Hb_002205_260

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2205: 184324-186109
Sequence    

Annotation

kegg
ID rcu:RCOM_0688810
description WRKY transcription factor, putative
nr
ID XP_012091129.1
description PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
swissprot
ID Q9SHB5
description WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1
trembl
ID S5CH76
description Uncharacterized protein OS=Jatropha curcas GN=WRKY55 PE=4 SV=1
Gene Ontology
ID GO:0003677
description wrky transcription factor 55

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_260 0.0 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
2 Hb_007407_010 0.1023928026 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
3 Hb_000133_060 0.1065593192 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_012545_080 0.1160778659 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
5 Hb_001289_030 0.116212274 - - syntaxin, plant, putative [Ricinus communis]
6 Hb_002660_090 0.1217319942 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
7 Hb_089140_020 0.1251840892 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_009683_010 0.125662276 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_003582_020 0.1337841992 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
10 Hb_007433_020 0.1345718434 - - hypothetical protein VITISV_005320 [Vitis vinifera]
11 Hb_001411_150 0.1408045491 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
12 Hb_000322_120 0.1416511368 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
13 Hb_004931_050 0.1416622534 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
14 Hb_007383_050 0.1440614819 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
15 Hb_005882_020 0.1459378377 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_117602_010 0.1460161558 - - dimethylaniline monooxygenase, putative [Ricinus communis]
17 Hb_000389_250 0.1499239181 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21556 [Jatropha curcas]
18 Hb_055706_010 0.1506887395 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
19 Hb_004267_070 0.1516183656 - - latex allene oxide synthase [Hevea brasiliensis]
20 Hb_005605_030 0.1519692456 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_260 Hb_002205_260 Hb_007407_010 Hb_007407_010 Hb_002205_260--Hb_007407_010 Hb_000133_060 Hb_000133_060 Hb_002205_260--Hb_000133_060 Hb_012545_080 Hb_012545_080 Hb_002205_260--Hb_012545_080 Hb_001289_030 Hb_001289_030 Hb_002205_260--Hb_001289_030 Hb_002660_090 Hb_002660_090 Hb_002205_260--Hb_002660_090 Hb_089140_020 Hb_089140_020 Hb_002205_260--Hb_089140_020 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_000110_330 Hb_000110_330 Hb_007407_010--Hb_000110_330 Hb_009683_010 Hb_009683_010 Hb_007407_010--Hb_009683_010 Hb_007407_010--Hb_012545_080 Hb_000133_060--Hb_000110_330 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_000996_200 Hb_000996_200 Hb_012545_080--Hb_000996_200 Hb_005357_270 Hb_005357_270 Hb_012545_080--Hb_005357_270 Hb_012545_080--Hb_000110_330 Hb_012545_080--Hb_009683_010 Hb_012404_050 Hb_012404_050 Hb_012545_080--Hb_012404_050 Hb_001289_030--Hb_009683_010 Hb_001411_150 Hb_001411_150 Hb_001289_030--Hb_001411_150 Hb_003582_020 Hb_003582_020 Hb_001289_030--Hb_003582_020 Hb_009189_010 Hb_009189_010 Hb_001289_030--Hb_009189_010 Hb_025477_020 Hb_025477_020 Hb_001289_030--Hb_025477_020 Hb_007383_050 Hb_007383_050 Hb_001289_030--Hb_007383_050 Hb_002660_090--Hb_001289_030 Hb_000322_120 Hb_000322_120 Hb_002660_090--Hb_000322_120 Hb_035391_010 Hb_035391_010 Hb_002660_090--Hb_035391_010 Hb_002660_090--Hb_025477_020 Hb_117602_010 Hb_117602_010 Hb_002660_090--Hb_117602_010 Hb_189242_010 Hb_189242_010 Hb_089140_020--Hb_189242_010 Hb_001168_100 Hb_001168_100 Hb_089140_020--Hb_001168_100 Hb_055706_010 Hb_055706_010 Hb_089140_020--Hb_055706_010 Hb_089140_020--Hb_007383_050 Hb_004267_070 Hb_004267_070 Hb_089140_020--Hb_004267_070 Hb_089140_020--Hb_001411_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.153821 0.033755 0.0188399 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158671 0

CAGE analysis