Hb_002207_100

Information

Type -
Description -
Location Contig2207: 135429-150413
Sequence    

Annotation

kegg
ID rcu:RCOM_0248850
description DNA-directed RNA polymerase II, putative
nr
ID XP_012085995.1
description PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
swissprot
ID Q9M1J2
description DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana GN=NRPE5A PE=1 SV=1
trembl
ID A0A067K1X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22486 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase v subunit 5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22740: 135439-150034 , PASA_asmbl_22741: 135539-150034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002207_100 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
2 Hb_003638_030 0.0596306622 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
3 Hb_000172_400 0.0623353824 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_098709_010 0.0774058655 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
5 Hb_033491_010 0.0861149434 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
6 Hb_000365_360 0.0876528826 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_000035_380 0.0896194733 - - -
8 Hb_134226_010 0.0927732675 - - 40S ribosomal protein S21e, putative [Ricinus communis]
9 Hb_001369_060 0.0931128197 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
10 Hb_001030_120 0.0937007768 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_006447_010 0.0940613113 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
12 Hb_026048_100 0.0943979628 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
13 Hb_000771_140 0.0964170505 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
14 Hb_157854_010 0.096705878 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
15 Hb_000152_140 0.0979420307 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
16 Hb_000696_110 0.0983928351 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
17 Hb_000700_090 0.0996732992 - - protein with unknown function [Ricinus communis]
18 Hb_004223_130 0.0999257193 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001433_170 0.1004117701 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
20 Hb_133271_020 0.1004788158 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_002207_100 Hb_002207_100 Hb_003638_030 Hb_003638_030 Hb_002207_100--Hb_003638_030 Hb_000172_400 Hb_000172_400 Hb_002207_100--Hb_000172_400 Hb_098709_010 Hb_098709_010 Hb_002207_100--Hb_098709_010 Hb_033491_010 Hb_033491_010 Hb_002207_100--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_002207_100--Hb_000365_360 Hb_000035_380 Hb_000035_380 Hb_002207_100--Hb_000035_380 Hb_000805_090 Hb_000805_090 Hb_003638_030--Hb_000805_090 Hb_026048_100 Hb_026048_100 Hb_003638_030--Hb_026048_100 Hb_003638_030--Hb_000172_400 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_098709_010--Hb_000365_360 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_098709_010--Hb_001369_060 Hb_098709_010--Hb_033491_010 Hb_098709_010--Hb_000700_090 Hb_033491_010--Hb_001369_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_033491_010--Hb_000784_090 Hb_002215_050 Hb_002215_050 Hb_033491_010--Hb_002215_050 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_000035_380--Hb_000317_430 Hb_060809_010 Hb_060809_010 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
205.856 66.3953 34.576 24.0228 259.74 287.768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
238.308 188.256 218.571 80.0495 15.9387

CAGE analysis