Hb_002207_110

Information

Type -
Description -
Location Contig2207: 155525-164922
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22742: 155522-165111 , PASA_asmbl_22743: 156941-157318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002207_110 0.0 - - -
2 Hb_012799_160 0.0670756994 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
3 Hb_004032_010 0.070299939 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
4 Hb_004306_020 0.0772381007 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
5 Hb_031089_040 0.0775059693 - - thioredoxin H-type 1 [Hevea brasiliensis]
6 Hb_000152_550 0.078749834 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
7 Hb_012022_120 0.0799227525 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
8 Hb_010180_020 0.079926217 - - hypothetical protein glysoja_030394 [Glycine soja]
9 Hb_001584_190 0.0833199154 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
10 Hb_000085_320 0.0847460163 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
11 Hb_004032_100 0.0856579994 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
12 Hb_004545_060 0.0862573509 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
13 Hb_101705_030 0.0862939716 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
14 Hb_005278_020 0.0865300193 - - PREDICTED: sorcin-like [Jatropha curcas]
15 Hb_001998_230 0.0870164471 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
16 Hb_000656_170 0.0885667683 - - lsm1, putative [Ricinus communis]
17 Hb_004195_210 0.0893885917 - - -
18 Hb_005867_020 0.089504539 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
19 Hb_000505_140 0.0902917846 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
20 Hb_000529_190 0.0905552631 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002207_110 Hb_002207_110 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_031089_040 Hb_031089_040 Hb_002207_110--Hb_031089_040 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_001789_070 Hb_001789_070 Hb_012799_160--Hb_001789_070 Hb_003125_010 Hb_003125_010 Hb_012799_160--Hb_003125_010 Hb_000529_190 Hb_000529_190 Hb_012799_160--Hb_000529_190 Hb_000479_190 Hb_000479_190 Hb_012799_160--Hb_000479_190 Hb_025240_040 Hb_025240_040 Hb_012799_160--Hb_025240_040 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_010180_020 Hb_010180_020 Hb_004306_020--Hb_010180_020 Hb_010180_010 Hb_010180_010 Hb_004306_020--Hb_010180_010 Hb_004545_060 Hb_004545_060 Hb_004306_020--Hb_004545_060 Hb_000024_080 Hb_000024_080 Hb_004306_020--Hb_000024_080 Hb_005686_060 Hb_005686_060 Hb_004306_020--Hb_005686_060 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_005400_030 Hb_005400_030 Hb_000152_550--Hb_005400_030 Hb_004032_100 Hb_004032_100 Hb_000152_550--Hb_004032_100 Hb_003964_100 Hb_003964_100 Hb_000152_550--Hb_003964_100 Hb_101705_030 Hb_101705_030 Hb_000152_550--Hb_101705_030 Hb_029866_070 Hb_029866_070 Hb_000152_550--Hb_029866_070 Hb_000505_140 Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94176 2.23452 6.78739 12.3558 11.3724 18.4259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9726 23.2592 13.5266 6.10369 5.29794

CAGE analysis