Hb_002211_040

Information

Type -
Description -
Location Contig2211: 35296-40479
Sequence    

Annotation

kegg
ID rcu:RCOM_1450030
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_012067182.1
description PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
swissprot
ID Q9MAP7
description Subtilisin-like protease SBT3.5 OS=Arabidopsis thaliana GN=SBT3.5 PE=1 SV=1
trembl
ID A0A067L3G5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26741 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002211_040 0.0 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
2 Hb_002401_010 0.1962636876 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
3 Hb_143629_030 0.2019532663 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
4 Hb_002301_200 0.2185464706 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
5 Hb_000111_300 0.2433467051 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
6 Hb_000275_070 0.248838091 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
7 Hb_005725_190 0.2542247067 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
8 Hb_001902_150 0.2673822543 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
9 Hb_000625_110 0.2719537934 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
10 Hb_007218_140 0.2742051907 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
11 Hb_003018_070 0.283932068 - - SAUR family protein, partial [Theobroma cacao]
12 Hb_000216_010 0.2859945031 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
13 Hb_000608_210 0.2880091932 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
14 Hb_011077_020 0.2885574635 - - kinase, putative [Ricinus communis]
15 Hb_006857_030 0.2892788797 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_008195_040 0.2939235314 - - hypothetical protein VITISV_033788 [Vitis vinifera]
17 Hb_000975_330 0.2954575296 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
18 Hb_006503_010 0.2965115754 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_005048_050 0.2990497636 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
20 Hb_000574_120 0.3004668977 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002211_040 Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_002211_040--Hb_002401_010 Hb_143629_030 Hb_143629_030 Hb_002211_040--Hb_143629_030 Hb_002301_200 Hb_002301_200 Hb_002211_040--Hb_002301_200 Hb_000111_300 Hb_000111_300 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_005725_190 Hb_005725_190 Hb_002211_040--Hb_005725_190 Hb_002401_010--Hb_002301_200 Hb_002401_010--Hb_143629_030 Hb_002401_010--Hb_005725_190 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150 Hb_000216_010 Hb_000216_010 Hb_143629_030--Hb_000216_010 Hb_143629_030--Hb_002301_200 Hb_006503_010 Hb_006503_010 Hb_143629_030--Hb_006503_010 Hb_009775_040 Hb_009775_040 Hb_143629_030--Hb_009775_040 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_002301_200--Hb_000111_300 Hb_000574_120 Hb_000574_120 Hb_002301_200--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_002301_200--Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_002301_200--Hb_065500_040 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_038758_010 Hb_038758_010 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_000275_070--Hb_005725_190 Hb_000142_010 Hb_000142_010 Hb_000275_070--Hb_000142_010 Hb_000275_070--Hb_000574_120 Hb_013057_030 Hb_013057_030 Hb_000275_070--Hb_013057_030 Hb_007218_140 Hb_007218_140 Hb_000275_070--Hb_007218_140 Hb_000172_300 Hb_000172_300 Hb_000275_070--Hb_000172_300 Hb_005725_190--Hb_000574_120 Hb_002760_060 Hb_002760_060 Hb_005725_190--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_005725_190--Hb_003442_050 Hb_005725_190--Hb_013057_030 Hb_005725_190--Hb_002301_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167727 2.03101 0.121097 0.12577 0.0235492 0.0152689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0190409 0.809069 0 0.285735 0

CAGE analysis